Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0635 and Dshi_0636 are separated by 198 nucleotides Dshi_0636 and Dshi_0637 overlap by 4 nucleotides Dshi_0637 and Dshi_0638 are separated by 191 nucleotides
Dshi_0635: Dshi_0635 - cyclic nucleotide-binding (RefSeq), at 633,409 to 635,610
_0635
Dshi_0636: Dshi_0636 - phospholipase/Carboxylesterase (RefSeq), at 635,809 to 636,474
_0636
Dshi_0637: Dshi_0637 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 636,471 to 637,394
_0637
Dshi_0638: Dshi_0638 - ABC transporter related (RefSeq), at 637,586 to 638,542
_0638
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 635.518 kb on - strand at 635.625 kb on - strand at 635.637 kb on + strand at 635.687 kb on + strand at 635.785 kb on + strand at 635.849 kb on - strand at 635.860 kb on + strand at 635.948 kb on - strand, within Dshi_0636 at 635.967 kb on - strand, within Dshi_0636 at 636.014 kb on - strand, within Dshi_0636 at 636.019 kb on + strand, within Dshi_0636 at 636.130 kb on - strand, within Dshi_0636 at 636.258 kb on + strand, within Dshi_0636 at 636.324 kb on + strand, within Dshi_0636 at 636.355 kb on + strand, within Dshi_0636 at 636.637 kb on - strand, within Dshi_0637 at 636.683 kb on - strand, within Dshi_0637 at 636.777 kb on - strand, within Dshi_0637 at 636.892 kb on + strand, within Dshi_0637 at 636.909 kb on + strand, within Dshi_0637 at 636.952 kb on - strand, within Dshi_0637 at 637.010 kb on - strand, within Dshi_0637 at 637.037 kb on + strand, within Dshi_0637 at 637.163 kb on - strand, within Dshi_0637 at 637.184 kb on - strand, within Dshi_0637 at 637.206 kb on + strand, within Dshi_0637 at 637.223 kb on + strand, within Dshi_0637 at 637.250 kb on + strand, within Dshi_0637 at 637.258 kb on + strand, within Dshi_0637 at 637.301 kb on + strand, within Dshi_0637 at 637.309 kb on - strand at 637.410 kb on - strand at 637.450 kb on + strand at 637.727 kb on - strand, within Dshi_0638 at 637.785 kb on + strand, within Dshi_0638 at 637.813 kb on + strand, within Dshi_0638 at 637.815 kb on + strand, within Dshi_0638 at 638.123 kb on - strand, within Dshi_0638 at 638.183 kb on - strand, within Dshi_0638 at 638.233 kb on - strand, within Dshi_0638 at 638.258 kb on - strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.337 kb on + strand, within Dshi_0638 at 638.345 kb on - strand, within Dshi_0638 at 638.347 kb on + strand, within Dshi_0638
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 635,518 - -2.3 635,625 - +0.9 635,637 + -0.8 635,687 + +0.9 635,785 + +0.7 635,849 - +1.6 635,860 + +0.9 635,948 - Dshi_0636 0.21 +0.5 635,967 - Dshi_0636 0.24 +1.0 636,014 - Dshi_0636 0.31 +3.7 636,019 + Dshi_0636 0.32 -1.5 636,130 - Dshi_0636 0.48 -0.1 636,258 + Dshi_0636 0.67 -0.7 636,324 + Dshi_0636 0.77 +0.3 636,355 + Dshi_0636 0.82 +3.5 636,637 - Dshi_0637 0.18 +0.0 636,683 - Dshi_0637 0.23 +0.9 636,777 - Dshi_0637 0.33 -0.7 636,892 + Dshi_0637 0.46 +0.4 636,909 + Dshi_0637 0.47 -3.3 636,952 - Dshi_0637 0.52 +0.9 637,010 - Dshi_0637 0.58 +1.5 637,037 + Dshi_0637 0.61 +1.8 637,163 - Dshi_0637 0.75 -3.0 637,184 - Dshi_0637 0.77 +0.9 637,206 + Dshi_0637 0.80 +0.5 637,223 + Dshi_0637 0.81 +0.3 637,250 + Dshi_0637 0.84 -1.9 637,258 + Dshi_0637 0.85 -0.9 637,301 + Dshi_0637 0.90 +0.2 637,309 - +1.5 637,410 - +0.5 637,450 + -2.3 637,727 - Dshi_0638 0.15 +2.9 637,785 + Dshi_0638 0.21 -0.5 637,813 + Dshi_0638 0.24 +2.9 637,815 + Dshi_0638 0.24 +0.5 638,123 - Dshi_0638 0.56 +0.4 638,183 - Dshi_0638 0.62 +0.9 638,233 - Dshi_0638 0.68 -2.4 638,258 - Dshi_0638 0.70 +0.0 638,337 + Dshi_0638 0.78 +0.9 638,337 + Dshi_0638 0.78 -2.4 638,337 + Dshi_0638 0.78 -1.5 638,345 - Dshi_0638 0.79 +0.7 638,347 + Dshi_0638 0.80 +2.1
Or see this region's nucleotide sequence