Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0614 and Dshi_0615 are separated by 21 nucleotides Dshi_0615 and Dshi_0616 are separated by 111 nucleotides Dshi_0616 and Dshi_0617 are separated by 372 nucleotides
Dshi_0614: Dshi_0614 - hypothetical protein (RefSeq), at 607,171 to 607,452
_0614
Dshi_0615: Dshi_0615 - orotidine 5'-phosphate decarboxylase (RefSeq), at 607,474 to 608,172
_0615
Dshi_0616: Dshi_0616 - hypothetical protein (RefSeq), at 608,284 to 608,697
_0616
Dshi_0617: Dshi_0617 - ATPase AAA-2 domain protein (RefSeq), at 609,070 to 611,685
_0617
Position (kb) 608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 607.290 kb on + strand, within Dshi_0614 at 607.322 kb on + strand, within Dshi_0614 at 607.325 kb on + strand, within Dshi_0614 at 607.424 kb on - strand at 607.633 kb on + strand, within Dshi_0615 at 607.635 kb on + strand, within Dshi_0615 at 607.739 kb on + strand, within Dshi_0615 at 607.786 kb on - strand, within Dshi_0615 at 607.786 kb on - strand, within Dshi_0615 at 607.827 kb on - strand, within Dshi_0615 at 607.884 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 608.039 kb on - strand, within Dshi_0615 at 608.055 kb on + strand, within Dshi_0615 at 608.106 kb on + strand at 608.106 kb on + strand at 608.114 kb on - strand at 608.199 kb on - strand at 608.199 kb on - strand at 608.222 kb on - strand at 608.234 kb on + strand at 608.234 kb on + strand at 608.247 kb on + strand at 608.353 kb on + strand, within Dshi_0616 at 608.370 kb on - strand, within Dshi_0616 at 608.370 kb on - strand, within Dshi_0616 at 608.407 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.451 kb on + strand, within Dshi_0616 at 608.480 kb on - strand, within Dshi_0616 at 608.489 kb on + strand, within Dshi_0616 at 608.589 kb on + strand, within Dshi_0616 at 608.589 kb on + strand, within Dshi_0616 at 608.604 kb on + strand, within Dshi_0616 at 608.617 kb on - strand, within Dshi_0616 at 608.636 kb on - strand, within Dshi_0616 at 608.761 kb on + strand at 608.823 kb on - strand at 608.880 kb on - strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.909 kb on + strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.917 kb on - strand at 608.942 kb on + strand at 608.974 kb on + strand at 608.975 kb on + strand at 609.006 kb on - strand at 609.084 kb on + strand at 609.108 kb on + strand at 609.108 kb on + strand at 609.108 kb on + strand at 609.262 kb on + strand at 609.515 kb on - strand, within Dshi_0617 at 609.573 kb on + strand, within Dshi_0617 at 609.581 kb on - strand, within Dshi_0617 at 609.609 kb on + strand, within Dshi_0617 at 609.628 kb on - strand, within Dshi_0617 at 609.666 kb on + strand, within Dshi_0617 at 609.674 kb on - strand, within Dshi_0617 at 609.684 kb on - strand, within Dshi_0617 at 609.694 kb on + strand, within Dshi_0617
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 607,290 + Dshi_0614 0.42 -1.6 607,322 + Dshi_0614 0.54 +0.9 607,325 + Dshi_0614 0.55 +0.3 607,424 - -0.1 607,633 + Dshi_0615 0.23 +2.1 607,635 + Dshi_0615 0.23 +2.3 607,739 + Dshi_0615 0.38 -1.1 607,786 - Dshi_0615 0.45 +0.9 607,786 - Dshi_0615 0.45 +0.9 607,827 - Dshi_0615 0.51 +1.1 607,884 + Dshi_0615 0.59 +0.9 607,929 + Dshi_0615 0.65 +0.9 607,929 + Dshi_0615 0.65 -0.0 607,929 + Dshi_0615 0.65 -0.1 608,039 - Dshi_0615 0.81 +1.8 608,055 + Dshi_0615 0.83 +0.4 608,106 + -1.7 608,106 + -2.5 608,114 - -2.4 608,199 - -0.7 608,199 - +1.9 608,222 - -0.8 608,234 + -1.1 608,234 + -0.6 608,247 + -1.7 608,353 + Dshi_0616 0.17 -0.5 608,370 - Dshi_0616 0.21 +1.2 608,370 - Dshi_0616 0.21 +0.9 608,407 + Dshi_0616 0.30 +2.0 608,443 + Dshi_0616 0.38 +3.7 608,443 + Dshi_0616 0.38 +0.9 608,443 + Dshi_0616 0.38 +0.0 608,443 + Dshi_0616 0.38 -0.7 608,443 + Dshi_0616 0.38 -1.8 608,451 + Dshi_0616 0.40 +0.5 608,480 - Dshi_0616 0.47 -0.7 608,489 + Dshi_0616 0.50 -0.1 608,589 + Dshi_0616 0.74 -2.5 608,589 + Dshi_0616 0.74 -3.3 608,604 + Dshi_0616 0.77 +0.5 608,617 - Dshi_0616 0.80 -1.3 608,636 - Dshi_0616 0.85 -0.1 608,761 + -1.3 608,823 - -0.4 608,880 - +0.9 608,909 + +0.2 608,909 + +0.9 608,909 + -1.1 608,909 + +1.1 608,909 + +2.5 608,909 + -0.5 608,917 - +0.2 608,917 - +1.1 608,917 - -1.4 608,917 - +3.1 608,917 - -2.9 608,917 - -0.2 608,942 + -0.2 608,974 + +3.2 608,975 + +1.5 609,006 - -3.1 609,084 + +1.9 609,108 + -0.1 609,108 + -1.0 609,108 + +1.9 609,262 + -0.7 609,515 - Dshi_0617 0.17 +0.5 609,573 + Dshi_0617 0.19 -1.1 609,581 - Dshi_0617 0.20 +1.4 609,609 + Dshi_0617 0.21 -2.1 609,628 - Dshi_0617 0.21 -3.7 609,666 + Dshi_0617 0.23 -0.3 609,674 - Dshi_0617 0.23 -0.4 609,684 - Dshi_0617 0.23 -0.2 609,694 + Dshi_0617 0.24 +1.5
Or see this region's nucleotide sequence