Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0599 and Dshi_0600 are separated by 46 nucleotides Dshi_0600 and Dshi_0601 are separated by 253 nucleotides
Dshi_0599: Dshi_0599 - deoxyribodipyrimidine photolyase-related protein (RefSeq), at 590,437 to 591,963
_0599
Dshi_0600: Dshi_0600 - MORN repeat-containing protein (RefSeq), at 592,010 to 593,416
_0600
Dshi_0601: Dshi_0601 - NAD+ synthetase (RefSeq), at 593,670 to 595,343
_0601
Position (kb) 592
593
594 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 591.028 kb on - strand, within Dshi_0599 at 591.043 kb on - strand, within Dshi_0599 at 591.095 kb on - strand, within Dshi_0599 at 591.157 kb on + strand, within Dshi_0599 at 591.157 kb on + strand, within Dshi_0599 at 591.165 kb on - strand, within Dshi_0599 at 591.232 kb on + strand, within Dshi_0599 at 591.240 kb on - strand, within Dshi_0599 at 591.240 kb on - strand, within Dshi_0599 at 591.255 kb on - strand, within Dshi_0599 at 591.255 kb on - strand, within Dshi_0599 at 591.301 kb on + strand, within Dshi_0599 at 591.320 kb on + strand, within Dshi_0599 at 591.320 kb on + strand, within Dshi_0599 at 591.320 kb on - strand, within Dshi_0599 at 591.322 kb on + strand, within Dshi_0599 at 591.322 kb on + strand, within Dshi_0599 at 591.322 kb on + strand, within Dshi_0599 at 591.381 kb on + strand, within Dshi_0599 at 591.404 kb on - strand, within Dshi_0599 at 591.419 kb on + strand, within Dshi_0599 at 591.449 kb on + strand, within Dshi_0599 at 591.460 kb on + strand, within Dshi_0599 at 591.477 kb on + strand, within Dshi_0599 at 591.490 kb on + strand, within Dshi_0599 at 591.505 kb on - strand, within Dshi_0599 at 591.507 kb on + strand, within Dshi_0599 at 591.507 kb on + strand, within Dshi_0599 at 591.507 kb on + strand, within Dshi_0599 at 591.517 kb on + strand, within Dshi_0599 at 591.524 kb on + strand, within Dshi_0599 at 591.569 kb on - strand, within Dshi_0599 at 591.586 kb on + strand, within Dshi_0599 at 591.633 kb on + strand, within Dshi_0599 at 591.643 kb on - strand, within Dshi_0599 at 591.643 kb on - strand, within Dshi_0599 at 591.649 kb on + strand, within Dshi_0599 at 591.658 kb on - strand, within Dshi_0599 at 591.686 kb on - strand, within Dshi_0599 at 591.691 kb on + strand, within Dshi_0599 at 591.697 kb on + strand, within Dshi_0599 at 591.697 kb on + strand, within Dshi_0599 at 591.716 kb on - strand, within Dshi_0599 at 591.750 kb on - strand, within Dshi_0599 at 591.770 kb on - strand, within Dshi_0599 at 591.859 kb on + strand at 591.864 kb on - strand at 591.864 kb on - strand at 591.984 kb on + strand at 592.049 kb on - strand at 592.082 kb on - strand at 592.095 kb on - strand at 592.106 kb on + strand at 592.106 kb on + strand at 592.107 kb on + strand at 592.114 kb on - strand at 592.114 kb on - strand at 592.117 kb on + strand at 592.151 kb on - strand, within Dshi_0600 at 592.162 kb on - strand, within Dshi_0600 at 592.259 kb on - strand, within Dshi_0600 at 592.336 kb on + strand, within Dshi_0600 at 592.397 kb on - strand, within Dshi_0600 at 592.406 kb on + strand, within Dshi_0600 at 592.470 kb on - strand, within Dshi_0600 at 592.509 kb on - strand, within Dshi_0600 at 592.886 kb on + strand, within Dshi_0600 at 592.899 kb on + strand, within Dshi_0600 at 592.901 kb on + strand, within Dshi_0600 at 593.047 kb on - strand, within Dshi_0600 at 593.225 kb on - strand, within Dshi_0600 at 593.241 kb on - strand, within Dshi_0600 at 593.259 kb on + strand, within Dshi_0600 at 593.259 kb on + strand, within Dshi_0600 at 593.269 kb on + strand, within Dshi_0600 at 593.269 kb on + strand, within Dshi_0600 at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.286 kb on - strand at 593.366 kb on - strand at 593.387 kb on + strand at 593.409 kb on - strand at 593.435 kb on - strand at 593.498 kb on + strand at 593.520 kb on + strand at 593.528 kb on - strand at 593.565 kb on + strand at 593.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 591,028 - Dshi_0599 0.39 -1.3 591,043 - Dshi_0599 0.40 -1.4 591,095 - Dshi_0599 0.43 -1.5 591,157 + Dshi_0599 0.47 -2.6 591,157 + Dshi_0599 0.47 +1.8 591,165 - Dshi_0599 0.48 -0.5 591,232 + Dshi_0599 0.52 +0.6 591,240 - Dshi_0599 0.53 +0.3 591,240 - Dshi_0599 0.53 -0.5 591,255 - Dshi_0599 0.54 -1.0 591,255 - Dshi_0599 0.54 -3.9 591,301 + Dshi_0599 0.57 -2.3 591,320 + Dshi_0599 0.58 -0.4 591,320 + Dshi_0599 0.58 -0.8 591,320 - Dshi_0599 0.58 -0.8 591,322 + Dshi_0599 0.58 -2.9 591,322 + Dshi_0599 0.58 -0.4 591,322 + Dshi_0599 0.58 +0.9 591,381 + Dshi_0599 0.62 +0.2 591,404 - Dshi_0599 0.63 -1.0 591,419 + Dshi_0599 0.64 +4.2 591,449 + Dshi_0599 0.66 -0.6 591,460 + Dshi_0599 0.67 -3.2 591,477 + Dshi_0599 0.68 +1.0 591,490 + Dshi_0599 0.69 +2.5 591,505 - Dshi_0599 0.70 -3.8 591,507 + Dshi_0599 0.70 -2.3 591,507 + Dshi_0599 0.70 -0.1 591,507 + Dshi_0599 0.70 +1.8 591,517 + Dshi_0599 0.71 +1.5 591,524 + Dshi_0599 0.71 +0.1 591,569 - Dshi_0599 0.74 +0.4 591,586 + Dshi_0599 0.75 -3.3 591,633 + Dshi_0599 0.78 -0.2 591,643 - Dshi_0599 0.79 -0.9 591,643 - Dshi_0599 0.79 -0.1 591,649 + Dshi_0599 0.79 +0.9 591,658 - Dshi_0599 0.80 -2.1 591,686 - Dshi_0599 0.82 -0.0 591,691 + Dshi_0599 0.82 -0.2 591,697 + Dshi_0599 0.83 -1.6 591,697 + Dshi_0599 0.83 -3.9 591,716 - Dshi_0599 0.84 -0.4 591,750 - Dshi_0599 0.86 +0.6 591,770 - Dshi_0599 0.87 -0.4 591,859 + -1.3 591,864 - -0.2 591,864 - +0.5 591,984 + +0.6 592,049 - -0.1 592,082 - -3.5 592,095 - -0.5 592,106 + +1.1 592,106 + +0.0 592,107 + -1.0 592,114 - -0.3 592,114 - -3.2 592,117 + -0.5 592,151 - Dshi_0600 0.10 -4.3 592,162 - Dshi_0600 0.11 -0.7 592,259 - Dshi_0600 0.18 +0.0 592,336 + Dshi_0600 0.23 +2.1 592,397 - Dshi_0600 0.28 -1.1 592,406 + Dshi_0600 0.28 -2.2 592,470 - Dshi_0600 0.33 -0.8 592,509 - Dshi_0600 0.35 -0.5 592,886 + Dshi_0600 0.62 +0.9 592,899 + Dshi_0600 0.63 +1.9 592,901 + Dshi_0600 0.63 +1.9 593,047 - Dshi_0600 0.74 -0.2 593,225 - Dshi_0600 0.86 +0.6 593,241 - Dshi_0600 0.87 -1.4 593,259 + Dshi_0600 0.89 -1.4 593,259 + Dshi_0600 0.89 -0.1 593,269 + Dshi_0600 0.89 -0.4 593,269 + Dshi_0600 0.89 -0.3 593,277 - +1.3 593,277 - -1.5 593,277 - -1.4 593,277 - -3.8 593,277 - -0.1 593,286 - +0.9 593,366 - +1.1 593,387 + -4.8 593,409 - +0.7 593,435 - -1.2 593,498 + -0.1 593,520 + +3.5 593,528 - -3.2 593,565 + +0.9 593,573 - -0.3
Or see this region's nucleotide sequence