Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0494

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0492 and Dshi_0493 overlap by 4 nucleotidesDshi_0493 and Dshi_0494 overlap by 4 nucleotidesDshi_0494 and Dshi_0495 are separated by 58 nucleotidesDshi_0495 and Dshi_0496 are separated by 206 nucleotides Dshi_0492: Dshi_0492 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 477,181 to 478,005 _0492 Dshi_0493: Dshi_0493 - ABC transporter related (RefSeq), at 478,002 to 478,751 _0493 Dshi_0494: Dshi_0494 - NnrS family protein (RefSeq), at 478,748 to 480,028 _0494 Dshi_0495: Dshi_0495 - hypothetical protein (RefSeq), at 480,087 to 480,497 _0495 Dshi_0496: Dshi_0496 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 480,704 to 482,722 _0496 Position (kb) 478 479 480 481Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 477.766 kb on + strand, within Dshi_0492at 477.785 kb on + strand, within Dshi_0492at 477.888 kb on - strand, within Dshi_0492at 477.888 kb on - strand, within Dshi_0492at 477.900 kb on - strand, within Dshi_0492at 477.907 kb on + strand, within Dshi_0492at 477.910 kb on + strand, within Dshi_0492at 477.936 kb on + strandat 477.944 kb on - strandat 477.979 kb on + strandat 477.979 kb on + strandat 477.979 kb on + strandat 477.987 kb on - strandat 477.987 kb on - strandat 478.016 kb on + strandat 478.019 kb on + strandat 478.045 kb on + strandat 478.046 kb on - strandat 478.103 kb on + strand, within Dshi_0493at 478.111 kb on - strand, within Dshi_0493at 478.163 kb on + strand, within Dshi_0493at 478.171 kb on - strand, within Dshi_0493at 478.171 kb on - strand, within Dshi_0493at 478.240 kb on - strand, within Dshi_0493at 478.283 kb on + strand, within Dshi_0493at 478.376 kb on + strand, within Dshi_0493at 478.538 kb on + strand, within Dshi_0493at 478.538 kb on + strand, within Dshi_0493at 478.546 kb on + strand, within Dshi_0493at 478.546 kb on - strand, within Dshi_0493at 478.554 kb on - strand, within Dshi_0493at 478.554 kb on - strand, within Dshi_0493at 478.652 kb on - strand, within Dshi_0493at 478.668 kb on + strand, within Dshi_0493at 478.676 kb on - strand, within Dshi_0493at 478.679 kb on + strandat 478.679 kb on + strandat 478.726 kb on - strandat 478.726 kb on - strandat 478.755 kb on - strandat 478.859 kb on + strandat 479.059 kb on + strand, within Dshi_0494at 479.059 kb on + strand, within Dshi_0494at 479.067 kb on - strand, within Dshi_0494at 479.079 kb on + strand, within Dshi_0494at 479.244 kb on - strand, within Dshi_0494at 479.244 kb on - strand, within Dshi_0494at 479.326 kb on - strand, within Dshi_0494at 479.337 kb on + strand, within Dshi_0494at 479.414 kb on + strand, within Dshi_0494at 479.468 kb on + strand, within Dshi_0494at 479.492 kb on + strand, within Dshi_0494at 479.500 kb on - strand, within Dshi_0494at 479.500 kb on - strand, within Dshi_0494at 479.526 kb on + strand, within Dshi_0494at 479.624 kb on - strand, within Dshi_0494at 479.651 kb on + strand, within Dshi_0494at 479.668 kb on + strand, within Dshi_0494at 479.714 kb on - strand, within Dshi_0494at 479.723 kb on + strand, within Dshi_0494at 479.853 kb on + strand, within Dshi_0494at 479.932 kb on + strandat 479.947 kb on + strandat 479.987 kb on - strandat 480.109 kb on - strandat 480.139 kb on + strand, within Dshi_0495at 480.216 kb on + strand, within Dshi_0495at 480.264 kb on + strand, within Dshi_0495at 480.336 kb on + strand, within Dshi_0495at 480.393 kb on + strand, within Dshi_0495at 480.393 kb on + strand, within Dshi_0495at 480.451 kb on + strand, within Dshi_0495at 480.456 kb on + strand, within Dshi_0495at 480.478 kb on + strandat 480.478 kb on - strandat 480.486 kb on - strandat 480.497 kb on + strandat 480.497 kb on + strandat 480.531 kb on + strandat 480.626 kb on - strandat 480.658 kb on + strandat 480.660 kb on + strandat 480.668 kb on + strandat 480.668 kb on - strandat 480.676 kb on - strandat 480.676 kb on - strandat 480.676 kb on - strandat 480.689 kb on - strandat 480.697 kb on - strandat 480.720 kb on - strandat 480.773 kb on + strandat 480.829 kb on - strandat 480.836 kb on - strandat 480.863 kb on + strandat 480.888 kb on - strandat 480.888 kb on - strandat 480.892 kb on - strandat 480.920 kb on + strand, within Dshi_0496at 480.988 kb on - strand, within Dshi_0496

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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477,766 + Dshi_0492 0.71 +0.8
477,785 + Dshi_0492 0.73 +1.0
477,888 - Dshi_0492 0.86 -0.1
477,888 - Dshi_0492 0.86 +3.8
477,900 - Dshi_0492 0.87 -1.8
477,907 + Dshi_0492 0.88 +0.9
477,910 + Dshi_0492 0.88 +1.8
477,936 + +2.1
477,944 - +1.7
477,979 + +2.0
477,979 + +1.3
477,979 + -1.6
477,987 - -2.2
477,987 - +1.3
478,016 + +0.1
478,019 + +1.4
478,045 + +0.3
478,046 - +1.3
478,103 + Dshi_0493 0.13 +4.2
478,111 - Dshi_0493 0.15 -2.0
478,163 + Dshi_0493 0.21 -0.6
478,171 - Dshi_0493 0.23 -1.0
478,171 - Dshi_0493 0.23 -1.6
478,240 - Dshi_0493 0.32 +0.6
478,283 + Dshi_0493 0.37 +2.9
478,376 + Dshi_0493 0.50 -0.5
478,538 + Dshi_0493 0.71 -0.9
478,538 + Dshi_0493 0.71 +1.5
478,546 + Dshi_0493 0.73 +1.5
478,546 - Dshi_0493 0.73 +0.1
478,554 - Dshi_0493 0.74 -1.8
478,554 - Dshi_0493 0.74 -0.3
478,652 - Dshi_0493 0.87 +1.9
478,668 + Dshi_0493 0.89 -2.0
478,676 - Dshi_0493 0.90 +1.3
478,679 + -0.3
478,679 + +3.6
478,726 - +1.0
478,726 - +0.2
478,755 - +0.9
478,859 + +0.6
479,059 + Dshi_0494 0.24 +1.7
479,059 + Dshi_0494 0.24 +0.9
479,067 - Dshi_0494 0.25 +2.4
479,079 + Dshi_0494 0.26 -1.8
479,244 - Dshi_0494 0.39 -0.7
479,244 - Dshi_0494 0.39 +2.0
479,326 - Dshi_0494 0.45 -3.5
479,337 + Dshi_0494 0.46 +3.3
479,414 + Dshi_0494 0.52 +2.0
479,468 + Dshi_0494 0.56 +1.0
479,492 + Dshi_0494 0.58 +2.3
479,500 - Dshi_0494 0.59 +0.4
479,500 - Dshi_0494 0.59 +1.3
479,526 + Dshi_0494 0.61 +0.7
479,624 - Dshi_0494 0.68 -1.3
479,651 + Dshi_0494 0.70 +2.6
479,668 + Dshi_0494 0.72 +1.6
479,714 - Dshi_0494 0.75 +1.3
479,723 + Dshi_0494 0.76 +1.4
479,853 + Dshi_0494 0.86 -0.7
479,932 + -0.0
479,947 + +0.6
479,987 - +0.6
480,109 - -0.6
480,139 + Dshi_0495 0.13 +0.6
480,216 + Dshi_0495 0.31 +1.0
480,264 + Dshi_0495 0.43 +0.9
480,336 + Dshi_0495 0.61 +4.4
480,393 + Dshi_0495 0.74 +1.2
480,393 + Dshi_0495 0.74 -0.4
480,451 + Dshi_0495 0.89 +0.8
480,456 + Dshi_0495 0.90 +1.0
480,478 + +0.1
480,478 - -0.1
480,486 - -1.6
480,497 + +2.3
480,497 + +0.3
480,531 + -3.8
480,626 - +1.0
480,658 + +0.3
480,660 + +1.0
480,668 + -2.5
480,668 - +0.7
480,676 - +1.1
480,676 - +1.0
480,676 - -0.8
480,689 - -0.9
480,697 - -2.1
480,720 - -3.1
480,773 + +1.3
480,829 - -2.9
480,836 - -0.3
480,863 + +1.4
480,888 - +0.7
480,888 - -2.3
480,892 - -1.5
480,920 + Dshi_0496 0.11 +1.1
480,988 - Dshi_0496 0.14 +2.7

Or see this region's nucleotide sequence