Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0456

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0455 and Dshi_0456 are separated by 92 nucleotidesDshi_0456 and Dshi_0457 overlap by 4 nucleotidesDshi_0457 and Dshi_0458 overlap by 4 nucleotides Dshi_0455: Dshi_0455 - hypothetical protein (RefSeq), at 442,029 to 442,946 _0455 Dshi_0456: Dshi_0456 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 443,039 to 443,995 _0456 Dshi_0457: Dshi_0457 - protein of unknown function DUF58 (RefSeq), at 443,992 to 444,900 _0457 Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268 _0458 Position (kb) 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 442.070 kb on + strandat 442.107 kb on - strandat 442.112 kb on + strandat 442.200 kb on + strand, within Dshi_0455at 442.204 kb on + strand, within Dshi_0455at 442.211 kb on + strand, within Dshi_0455at 442.212 kb on - strand, within Dshi_0455at 442.212 kb on - strand, within Dshi_0455at 442.212 kb on - strand, within Dshi_0455at 442.218 kb on - strand, within Dshi_0455at 442.233 kb on - strand, within Dshi_0455at 442.289 kb on - strand, within Dshi_0455at 442.315 kb on + strand, within Dshi_0455at 442.315 kb on + strand, within Dshi_0455at 442.323 kb on - strand, within Dshi_0455at 442.323 kb on - strand, within Dshi_0455at 442.323 kb on - strand, within Dshi_0455at 442.337 kb on + strand, within Dshi_0455at 442.345 kb on - strand, within Dshi_0455at 442.345 kb on - strand, within Dshi_0455at 442.345 kb on - strand, within Dshi_0455at 442.372 kb on + strand, within Dshi_0455at 442.393 kb on - strand, within Dshi_0455at 442.407 kb on + strand, within Dshi_0455at 442.434 kb on + strand, within Dshi_0455at 442.435 kb on + strand, within Dshi_0455at 442.442 kb on - strand, within Dshi_0455at 442.454 kb on - strand, within Dshi_0455at 442.469 kb on + strand, within Dshi_0455at 442.477 kb on - strand, within Dshi_0455at 442.485 kb on + strand, within Dshi_0455at 442.498 kb on - strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.509 kb on + strand, within Dshi_0455at 442.517 kb on - strand, within Dshi_0455at 442.517 kb on - strand, within Dshi_0455at 442.522 kb on + strand, within Dshi_0455at 442.553 kb on + strand, within Dshi_0455at 442.561 kb on - strand, within Dshi_0455at 442.577 kb on + strand, within Dshi_0455at 442.582 kb on - strand, within Dshi_0455at 442.601 kb on + strand, within Dshi_0455at 442.631 kb on + strand, within Dshi_0455at 442.640 kb on - strand, within Dshi_0455at 442.653 kb on + strand, within Dshi_0455at 442.653 kb on + strand, within Dshi_0455at 442.661 kb on - strand, within Dshi_0455at 442.664 kb on + strand, within Dshi_0455at 442.677 kb on - strand, within Dshi_0455at 442.680 kb on + strand, within Dshi_0455at 442.688 kb on - strand, within Dshi_0455at 442.749 kb on - strand, within Dshi_0455at 442.791 kb on - strand, within Dshi_0455at 442.803 kb on + strand, within Dshi_0455at 442.803 kb on + strand, within Dshi_0455at 442.804 kb on + strand, within Dshi_0455at 442.811 kb on - strand, within Dshi_0455at 442.811 kb on - strand, within Dshi_0455at 442.819 kb on - strand, within Dshi_0455at 442.824 kb on - strand, within Dshi_0455at 442.893 kb on - strandat 442.895 kb on + strandat 442.895 kb on + strandat 442.903 kb on - strandat 442.953 kb on + strandat 442.984 kb on - strandat 443.023 kb on + strandat 443.031 kb on - strandat 443.033 kb on + strandat 443.056 kb on - strandat 443.123 kb on - strandat 443.205 kb on - strand, within Dshi_0456at 443.207 kb on + strand, within Dshi_0456at 443.256 kb on - strand, within Dshi_0456at 443.256 kb on - strand, within Dshi_0456at 443.304 kb on + strand, within Dshi_0456at 443.311 kb on + strand, within Dshi_0456at 443.311 kb on + strand, within Dshi_0456at 443.342 kb on + strand, within Dshi_0456at 443.352 kb on + strand, within Dshi_0456at 443.376 kb on + strand, within Dshi_0456at 443.379 kb on - strand, within Dshi_0456at 443.421 kb on - strand, within Dshi_0456at 443.421 kb on - strand, within Dshi_0456at 443.431 kb on + strand, within Dshi_0456at 443.432 kb on - strand, within Dshi_0456at 443.445 kb on - strand, within Dshi_0456at 443.563 kb on + strand, within Dshi_0456at 443.578 kb on + strand, within Dshi_0456at 443.634 kb on - strand, within Dshi_0456at 443.636 kb on + strand, within Dshi_0456at 443.637 kb on + strand, within Dshi_0456at 443.637 kb on + strand, within Dshi_0456at 443.637 kb on + strand, within Dshi_0456at 443.639 kb on - strand, within Dshi_0456at 443.671 kb on - strand, within Dshi_0456at 443.683 kb on - strand, within Dshi_0456at 443.685 kb on + strand, within Dshi_0456at 443.685 kb on + strand, within Dshi_0456at 443.693 kb on - strand, within Dshi_0456at 443.721 kb on + strand, within Dshi_0456at 443.737 kb on + strand, within Dshi_0456at 443.745 kb on - strand, within Dshi_0456at 443.772 kb on + strand, within Dshi_0456at 443.790 kb on + strand, within Dshi_0456at 443.797 kb on + strand, within Dshi_0456at 443.801 kb on + strand, within Dshi_0456at 443.806 kb on + strand, within Dshi_0456at 443.806 kb on + strand, within Dshi_0456at 443.812 kb on + strand, within Dshi_0456at 443.814 kb on - strand, within Dshi_0456at 443.847 kb on + strand, within Dshi_0456at 443.863 kb on + strand, within Dshi_0456at 443.884 kb on - strand, within Dshi_0456at 443.912 kb on + strandat 443.912 kb on + strandat 443.948 kb on - strandat 443.979 kb on - strandat 444.020 kb on - strandat 444.054 kb on + strandat 444.127 kb on - strand, within Dshi_0457at 444.203 kb on - strand, within Dshi_0457at 444.291 kb on + strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.299 kb on - strand, within Dshi_0457at 444.372 kb on - strand, within Dshi_0457at 444.389 kb on - strand, within Dshi_0457at 444.420 kb on - strand, within Dshi_0457at 444.526 kb on - strand, within Dshi_0457at 444.541 kb on + strand, within Dshi_0457at 444.559 kb on + strand, within Dshi_0457at 444.688 kb on - strand, within Dshi_0457at 444.712 kb on - strand, within Dshi_0457at 444.801 kb on - strand, within Dshi_0457at 444.864 kb on - strandat 444.886 kb on - strandat 444.946 kb on + strand, within Dshi_0458at 444.977 kb on + strand, within Dshi_0458at 444.982 kb on + strand, within Dshi_0458at 444.992 kb on + strand, within Dshi_0458

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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442,070 + +0.5
442,107 - -0.3
442,112 + -1.2
442,200 + Dshi_0455 0.19 +0.1
442,204 + Dshi_0455 0.19 -2.0
442,211 + Dshi_0455 0.20 +1.4
442,212 - Dshi_0455 0.20 -0.1
442,212 - Dshi_0455 0.20 +0.3
442,212 - Dshi_0455 0.20 +0.8
442,218 - Dshi_0455 0.21 -0.3
442,233 - Dshi_0455 0.22 +0.8
442,289 - Dshi_0455 0.28 -1.4
442,315 + Dshi_0455 0.31 +1.4
442,315 + Dshi_0455 0.31 -1.8
442,323 - Dshi_0455 0.32 -0.4
442,323 - Dshi_0455 0.32 +0.8
442,323 - Dshi_0455 0.32 -0.6
442,337 + Dshi_0455 0.34 +1.1
442,345 - Dshi_0455 0.34 -3.7
442,345 - Dshi_0455 0.34 +3.2
442,345 - Dshi_0455 0.34 -0.5
442,372 + Dshi_0455 0.37 +0.8
442,393 - Dshi_0455 0.40 -0.6
442,407 + Dshi_0455 0.41 +1.0
442,434 + Dshi_0455 0.44 +1.0
442,435 + Dshi_0455 0.44 -2.2
442,442 - Dshi_0455 0.45 +2.0
442,454 - Dshi_0455 0.46 +0.4
442,469 + Dshi_0455 0.48 -2.6
442,477 - Dshi_0455 0.49 -0.4
442,485 + Dshi_0455 0.50 -1.7
442,498 - Dshi_0455 0.51 -0.4
442,509 + Dshi_0455 0.52 +0.2
442,509 + Dshi_0455 0.52 -2.7
442,509 + Dshi_0455 0.52 +0.2
442,509 + Dshi_0455 0.52 -0.6
442,517 - Dshi_0455 0.53 -2.3
442,517 - Dshi_0455 0.53 +4.2
442,522 + Dshi_0455 0.54 -0.9
442,553 + Dshi_0455 0.57 +0.9
442,561 - Dshi_0455 0.58 -0.6
442,577 + Dshi_0455 0.60 -1.6
442,582 - Dshi_0455 0.60 +0.8
442,601 + Dshi_0455 0.62 +3.8
442,631 + Dshi_0455 0.66 +1.0
442,640 - Dshi_0455 0.67 +0.3
442,653 + Dshi_0455 0.68 +0.6
442,653 + Dshi_0455 0.68 +1.5
442,661 - Dshi_0455 0.69 +0.7
442,664 + Dshi_0455 0.69 +2.1
442,677 - Dshi_0455 0.71 -1.8
442,680 + Dshi_0455 0.71 +0.5
442,688 - Dshi_0455 0.72 -0.4
442,749 - Dshi_0455 0.78 -1.6
442,791 - Dshi_0455 0.83 +1.6
442,803 + Dshi_0455 0.84 +1.0
442,803 + Dshi_0455 0.84 -1.9
442,804 + Dshi_0455 0.84 +0.5
442,811 - Dshi_0455 0.85 -0.0
442,811 - Dshi_0455 0.85 -2.6
442,819 - Dshi_0455 0.86 +0.6
442,824 - Dshi_0455 0.87 +0.2
442,893 - +1.0
442,895 + +2.3
442,895 + -1.0
442,903 - +1.0
442,953 + +0.8
442,984 - -0.5
443,023 + +0.8
443,031 - +2.2
443,033 + +1.0
443,056 - +0.7
443,123 - -0.0
443,205 - Dshi_0456 0.17 -0.3
443,207 + Dshi_0456 0.18 -1.9
443,256 - Dshi_0456 0.23 -0.7
443,256 - Dshi_0456 0.23 +1.2
443,304 + Dshi_0456 0.28 +1.0
443,311 + Dshi_0456 0.28 +2.8
443,311 + Dshi_0456 0.28 +0.2
443,342 + Dshi_0456 0.32 +0.4
443,352 + Dshi_0456 0.33 +0.2
443,376 + Dshi_0456 0.35 -1.0
443,379 - Dshi_0456 0.36 -0.4
443,421 - Dshi_0456 0.40 -0.1
443,421 - Dshi_0456 0.40 +5.2
443,431 + Dshi_0456 0.41 +1.1
443,432 - Dshi_0456 0.41 -2.8
443,445 - Dshi_0456 0.42 -2.2
443,563 + Dshi_0456 0.55 +0.5
443,578 + Dshi_0456 0.56 +0.8
443,634 - Dshi_0456 0.62 -0.1
443,636 + Dshi_0456 0.62 -0.0
443,637 + Dshi_0456 0.62 +4.0
443,637 + Dshi_0456 0.62 +0.7
443,637 + Dshi_0456 0.62 +2.5
443,639 - Dshi_0456 0.63 +1.5
443,671 - Dshi_0456 0.66 +1.7
443,683 - Dshi_0456 0.67 -0.3
443,685 + Dshi_0456 0.68 -0.4
443,685 + Dshi_0456 0.68 +0.9
443,693 - Dshi_0456 0.68 +0.8
443,721 + Dshi_0456 0.71 +0.5
443,737 + Dshi_0456 0.73 +1.3
443,745 - Dshi_0456 0.74 -0.7
443,772 + Dshi_0456 0.77 +3.8
443,790 + Dshi_0456 0.78 -2.3
443,797 + Dshi_0456 0.79 -0.0
443,801 + Dshi_0456 0.80 +0.9
443,806 + Dshi_0456 0.80 +2.2
443,806 + Dshi_0456 0.80 +1.0
443,812 + Dshi_0456 0.81 +4.2
443,814 - Dshi_0456 0.81 +0.4
443,847 + Dshi_0456 0.84 +1.7
443,863 + Dshi_0456 0.86 +1.9
443,884 - Dshi_0456 0.88 +1.0
443,912 + +1.1
443,912 + +0.2
443,948 - +2.6
443,979 - +1.8
444,020 - +0.3
444,054 + -2.0
444,127 - Dshi_0457 0.15 -0.0
444,203 - Dshi_0457 0.23 +1.9
444,291 + Dshi_0457 0.33 +3.7
444,294 - Dshi_0457 0.33 -2.0
444,294 - Dshi_0457 0.33 +1.0
444,294 - Dshi_0457 0.33 +0.3
444,294 - Dshi_0457 0.33 +0.8
444,299 - Dshi_0457 0.34 +0.6
444,372 - Dshi_0457 0.42 -1.3
444,389 - Dshi_0457 0.44 +0.9
444,420 - Dshi_0457 0.47 -1.2
444,526 - Dshi_0457 0.59 +0.2
444,541 + Dshi_0457 0.60 -2.3
444,559 + Dshi_0457 0.62 -0.9
444,688 - Dshi_0457 0.77 +3.0
444,712 - Dshi_0457 0.79 +0.1
444,801 - Dshi_0457 0.89 +1.7
444,864 - -0.6
444,886 - +1.0
444,946 + Dshi_0458 0.13 +0.3
444,977 + Dshi_0458 0.22 +0.3
444,982 + Dshi_0458 0.23 -0.4
444,992 + Dshi_0458 0.26 +1.0

Or see this region's nucleotide sequence