Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0428

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0426 and Dshi_0427 are separated by 147 nucleotidesDshi_0427 and Dshi_0428 are separated by 19 nucleotidesDshi_0428 and Dshi_0429 are separated by 112 nucleotidesDshi_0429 and Dshi_0430 are separated by 22 nucleotides Dshi_0426: Dshi_0426 - hypothetical protein (RefSeq), at 418,488 to 418,850 _0426 Dshi_0427: Dshi_0427 - hypothetical protein (RefSeq), at 418,998 to 419,249 _0427 Dshi_0428: Dshi_0428 - Poly-beta-hydroxybutyrate polymerase domain protein (RefSeq), at 419,269 to 421,152 _0428 Dshi_0429: Dshi_0429 - uncharacterized conserved coiled coil protein (RefSeq), at 421,265 to 421,552 _0429 Dshi_0430: Dshi_0430 - hypothetical protein (RefSeq), at 421,575 to 422,009 _0430 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 418.377 kb on + strandat 418.450 kb on - strandat 418.533 kb on - strand, within Dshi_0426at 418.562 kb on + strand, within Dshi_0426at 418.563 kb on + strand, within Dshi_0426at 418.654 kb on + strand, within Dshi_0426at 418.661 kb on - strand, within Dshi_0426at 418.685 kb on - strand, within Dshi_0426at 418.695 kb on - strand, within Dshi_0426at 418.714 kb on - strand, within Dshi_0426at 418.891 kb on + strandat 418.935 kb on + strandat 418.940 kb on + strandat 418.979 kb on - strandat 419.023 kb on + strandat 419.031 kb on - strand, within Dshi_0427at 419.047 kb on + strand, within Dshi_0427at 419.061 kb on + strand, within Dshi_0427at 419.078 kb on - strand, within Dshi_0427at 419.107 kb on + strand, within Dshi_0427at 419.126 kb on + strand, within Dshi_0427at 419.169 kb on - strand, within Dshi_0427at 419.261 kb on + strandat 419.306 kb on + strandat 419.334 kb on - strandat 419.357 kb on + strandat 419.358 kb on - strandat 419.528 kb on - strand, within Dshi_0428at 419.633 kb on + strand, within Dshi_0428at 419.638 kb on + strand, within Dshi_0428at 419.643 kb on + strand, within Dshi_0428at 419.646 kb on - strand, within Dshi_0428at 419.651 kb on + strand, within Dshi_0428at 419.760 kb on - strand, within Dshi_0428at 419.792 kb on + strand, within Dshi_0428at 419.800 kb on - strand, within Dshi_0428at 419.814 kb on + strand, within Dshi_0428at 419.841 kb on + strand, within Dshi_0428at 419.880 kb on + strand, within Dshi_0428at 419.961 kb on - strand, within Dshi_0428at 420.004 kb on - strand, within Dshi_0428at 420.008 kb on - strand, within Dshi_0428at 420.008 kb on - strand, within Dshi_0428at 420.011 kb on + strand, within Dshi_0428at 420.012 kb on - strand, within Dshi_0428at 420.087 kb on + strand, within Dshi_0428at 420.107 kb on + strand, within Dshi_0428at 420.112 kb on + strand, within Dshi_0428at 420.198 kb on + strand, within Dshi_0428at 420.282 kb on + strand, within Dshi_0428at 420.291 kb on + strand, within Dshi_0428at 420.300 kb on + strand, within Dshi_0428at 420.325 kb on + strand, within Dshi_0428at 420.343 kb on - strand, within Dshi_0428at 420.361 kb on - strand, within Dshi_0428at 420.364 kb on - strand, within Dshi_0428at 420.380 kb on + strand, within Dshi_0428at 420.395 kb on + strand, within Dshi_0428at 420.416 kb on + strand, within Dshi_0428at 420.416 kb on + strand, within Dshi_0428at 420.416 kb on - strand, within Dshi_0428at 420.500 kb on - strand, within Dshi_0428at 420.510 kb on + strand, within Dshi_0428at 420.515 kb on - strand, within Dshi_0428at 420.596 kb on + strand, within Dshi_0428at 420.606 kb on - strand, within Dshi_0428at 420.606 kb on - strand, within Dshi_0428at 420.674 kb on - strand, within Dshi_0428at 420.685 kb on - strand, within Dshi_0428at 420.686 kb on + strand, within Dshi_0428at 420.712 kb on - strand, within Dshi_0428at 420.727 kb on + strand, within Dshi_0428at 420.734 kb on + strand, within Dshi_0428at 420.884 kb on + strand, within Dshi_0428at 420.889 kb on + strand, within Dshi_0428at 420.938 kb on - strand, within Dshi_0428at 420.945 kb on + strand, within Dshi_0428at 420.945 kb on + strand, within Dshi_0428at 420.953 kb on - strand, within Dshi_0428at 420.969 kb on + strandat 421.017 kb on - strandat 421.019 kb on + strandat 421.072 kb on - strandat 421.103 kb on - strandat 421.133 kb on + strandat 421.141 kb on - strandat 421.154 kb on - strandat 421.188 kb on + strandat 421.188 kb on + strandat 421.188 kb on + strandat 421.232 kb on + strandat 421.245 kb on - strandat 421.251 kb on - strandat 421.251 kb on - strandat 421.259 kb on - strandat 421.263 kb on + strandat 421.271 kb on - strandat 421.320 kb on + strand, within Dshi_0429at 421.351 kb on - strand, within Dshi_0429at 421.355 kb on + strand, within Dshi_0429at 421.415 kb on - strand, within Dshi_0429at 421.536 kb on + strandat 421.555 kb on + strandat 421.573 kb on + strandat 421.573 kb on + strandat 421.581 kb on - strandat 421.582 kb on + strandat 421.582 kb on + strandat 421.590 kb on - strandat 421.590 kb on - strandat 421.599 kb on - strandat 421.600 kb on + strandat 421.610 kb on - strandat 421.752 kb on - strand, within Dshi_0430at 421.796 kb on - strand, within Dshi_0430at 421.801 kb on - strand, within Dshi_0430at 421.923 kb on - strand, within Dshi_0430at 421.956 kb on + strand, within Dshi_0430at 421.969 kb on - strandat 422.007 kb on - strandat 422.007 kb on - strandat 422.068 kb on + strandat 422.081 kb on - strandat 422.081 kb on - strandat 422.094 kb on + strandat 422.121 kb on + strandat 422.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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418,377 + +0.9
418,450 - -1.2
418,533 - Dshi_0426 0.12 -2.4
418,562 + Dshi_0426 0.20 +0.9
418,563 + Dshi_0426 0.21 +0.4
418,654 + Dshi_0426 0.46 +0.9
418,661 - Dshi_0426 0.48 -1.4
418,685 - Dshi_0426 0.54 -0.8
418,695 - Dshi_0426 0.57 +0.9
418,714 - Dshi_0426 0.62 +0.5
418,891 + -0.9
418,935 + -0.8
418,940 + +1.3
418,979 - -0.1
419,023 + -2.2
419,031 - Dshi_0427 0.13 +0.9
419,047 + Dshi_0427 0.19 +0.6
419,061 + Dshi_0427 0.25 -3.5
419,078 - Dshi_0427 0.32 +2.9
419,107 + Dshi_0427 0.43 +1.3
419,126 + Dshi_0427 0.51 -1.4
419,169 - Dshi_0427 0.68 -2.1
419,261 + -0.4
419,306 + -1.6
419,334 - +0.0
419,357 + -1.4
419,358 - -1.5
419,528 - Dshi_0428 0.14 +0.9
419,633 + Dshi_0428 0.19 +2.5
419,638 + Dshi_0428 0.20 +0.7
419,643 + Dshi_0428 0.20 -2.9
419,646 - Dshi_0428 0.20 +1.2
419,651 + Dshi_0428 0.20 -1.1
419,760 - Dshi_0428 0.26 +4.1
419,792 + Dshi_0428 0.28 -0.6
419,800 - Dshi_0428 0.28 -2.8
419,814 + Dshi_0428 0.29 +2.2
419,841 + Dshi_0428 0.30 -3.6
419,880 + Dshi_0428 0.32 +0.6
419,961 - Dshi_0428 0.37 +0.5
420,004 - Dshi_0428 0.39 -3.5
420,008 - Dshi_0428 0.39 +2.7
420,008 - Dshi_0428 0.39 -1.6
420,011 + Dshi_0428 0.39 -1.6
420,012 - Dshi_0428 0.39 +0.1
420,087 + Dshi_0428 0.43 -0.1
420,107 + Dshi_0428 0.44 +1.4
420,112 + Dshi_0428 0.45 +0.1
420,198 + Dshi_0428 0.49 -2.2
420,282 + Dshi_0428 0.54 +0.2
420,291 + Dshi_0428 0.54 -1.0
420,300 + Dshi_0428 0.55 +0.4
420,325 + Dshi_0428 0.56 +0.9
420,343 - Dshi_0428 0.57 +0.9
420,361 - Dshi_0428 0.58 -2.5
420,364 - Dshi_0428 0.58 +0.9
420,380 + Dshi_0428 0.59 +1.3
420,395 + Dshi_0428 0.60 -0.5
420,416 + Dshi_0428 0.61 +0.9
420,416 + Dshi_0428 0.61 +0.1
420,416 - Dshi_0428 0.61 -2.2
420,500 - Dshi_0428 0.65 +2.5
420,510 + Dshi_0428 0.66 +0.6
420,515 - Dshi_0428 0.66 +2.1
420,596 + Dshi_0428 0.70 -3.6
420,606 - Dshi_0428 0.71 +0.1
420,606 - Dshi_0428 0.71 -2.2
420,674 - Dshi_0428 0.75 -1.1
420,685 - Dshi_0428 0.75 +1.6
420,686 + Dshi_0428 0.75 -2.2
420,712 - Dshi_0428 0.77 +1.0
420,727 + Dshi_0428 0.77 -0.1
420,734 + Dshi_0428 0.78 -2.5
420,884 + Dshi_0428 0.86 +0.3
420,889 + Dshi_0428 0.86 +0.9
420,938 - Dshi_0428 0.89 -3.6
420,945 + Dshi_0428 0.89 -2.2
420,945 + Dshi_0428 0.89 -1.6
420,953 - Dshi_0428 0.89 -0.9
420,969 + -0.2
421,017 - +0.9
421,019 + -0.9
421,072 - -0.1
421,103 - -1.6
421,133 + -1.3
421,141 - -0.6
421,154 - +2.3
421,188 + +0.9
421,188 + -1.1
421,188 + -1.9
421,232 + -1.6
421,245 - -1.1
421,251 - -0.1
421,251 - +0.6
421,259 - -1.6
421,263 + -2.6
421,271 - +2.2
421,320 + Dshi_0429 0.19 -1.1
421,351 - Dshi_0429 0.30 -0.6
421,355 + Dshi_0429 0.31 +2.4
421,415 - Dshi_0429 0.52 -2.1
421,536 + +1.9
421,555 + +1.1
421,573 + -0.5
421,573 + +0.2
421,581 - -2.4
421,582 + +1.5
421,582 + +1.3
421,590 - -0.8
421,590 - +0.1
421,599 - +1.9
421,600 + +0.0
421,610 - -1.6
421,752 - Dshi_0430 0.41 +0.1
421,796 - Dshi_0430 0.51 +0.7
421,801 - Dshi_0430 0.52 -1.4
421,923 - Dshi_0430 0.80 +1.9
421,956 + Dshi_0430 0.88 -1.8
421,969 - +0.2
422,007 - +0.0
422,007 - -0.6
422,068 + -0.8
422,081 - -1.4
422,081 - +2.9
422,094 + +1.2
422,121 + -1.4
422,129 - -1.7

Or see this region's nucleotide sequence