Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0317 and Dshi_0318 are separated by 349 nucleotides Dshi_0318 and Dshi_0319 are separated by 120 nucleotides
Dshi_0317: Dshi_0317 - ATP12 ATPase (RefSeq), at 305,238 to 305,942
_0317
Dshi_0318: Dshi_0318 - cationic amino acid ABC transporter, periplasmic binding protein (RefSeq), at 306,292 to 307,308
_0318
Dshi_0319: Dshi_0319 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 307,429 to 308,664
_0319
Position (kb) 306
307
308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 305.936 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 306.024 kb on - strand at 306.034 kb on - strand at 306.046 kb on - strand at 306.075 kb on + strand at 306.075 kb on + strand at 306.123 kb on + strand at 306.140 kb on - strand at 306.152 kb on - strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.217 kb on - strand at 306.220 kb on - strand at 306.221 kb on + strand at 306.265 kb on - strand at 306.273 kb on + strand at 306.281 kb on - strand at 306.281 kb on - strand at 306.293 kb on - strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.363 kb on - strand at 306.373 kb on + strand at 306.381 kb on - strand at 306.381 kb on - strand at 306.388 kb on + strand at 306.388 kb on + strand at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.402 kb on + strand, within Dshi_0318 at 306.407 kb on + strand, within Dshi_0318 at 306.458 kb on + strand, within Dshi_0318 at 306.466 kb on - strand, within Dshi_0318 at 306.469 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.521 kb on + strand, within Dshi_0318 at 306.538 kb on + strand, within Dshi_0318 at 306.541 kb on - strand, within Dshi_0318 at 306.546 kb on - strand, within Dshi_0318 at 306.556 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.668 kb on + strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.727 kb on - strand, within Dshi_0318 at 306.914 kb on + strand, within Dshi_0318 at 306.930 kb on + strand, within Dshi_0318 at 306.973 kb on - strand, within Dshi_0318 at 307.042 kb on + strand, within Dshi_0318 at 307.113 kb on + strand, within Dshi_0318 at 307.277 kb on - strand at 307.277 kb on - strand at 307.279 kb on + strand at 307.284 kb on + strand at 307.284 kb on + strand at 307.287 kb on - strand at 307.287 kb on - strand at 307.292 kb on - strand at 307.372 kb on + strand at 307.377 kb on + strand at 307.380 kb on - strand at 307.380 kb on - strand at 307.382 kb on + strand at 307.421 kb on + strand at 307.426 kb on + strand at 307.528 kb on + strand at 307.573 kb on + strand, within Dshi_0319 at 307.588 kb on + strand, within Dshi_0319 at 307.588 kb on + strand, within Dshi_0319 at 307.598 kb on - strand, within Dshi_0319 at 307.604 kb on + strand, within Dshi_0319 at 307.641 kb on + strand, within Dshi_0319 at 307.674 kb on + strand, within Dshi_0319 at 307.740 kb on - strand, within Dshi_0319 at 307.782 kb on + strand, within Dshi_0319 at 307.887 kb on - strand, within Dshi_0319 at 307.946 kb on - strand, within Dshi_0319 at 307.965 kb on - strand, within Dshi_0319 at 307.968 kb on - strand, within Dshi_0319 at 307.983 kb on - strand, within Dshi_0319 at 307.993 kb on + strand, within Dshi_0319 at 307.995 kb on + strand, within Dshi_0319 at 308.111 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.233 kb on - strand, within Dshi_0319 at 308.269 kb on + strand, within Dshi_0319
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 305,936 + -2.3 305,948 + +2.2 305,948 + +1.4 305,948 + -3.0 305,948 + -1.0 305,948 + +2.0 305,948 + -1.0 305,948 + +2.1 305,948 + +0.0 305,948 + -3.0 305,948 + +0.7 305,948 + -2.8 305,948 + -0.5 305,948 + +1.6 305,948 + +1.0 305,948 + -1.6 305,948 + -1.4 305,948 + -0.4 305,948 + -0.9 305,948 + +0.4 305,948 + +0.1 305,948 + -1.1 305,948 + +1.3 305,948 + -0.9 305,948 + -2.2 305,948 + +0.6 305,948 + -0.4 305,956 - +4.8 305,956 - -3.7 305,956 - -1.4 305,956 - -0.3 305,956 - -0.3 305,956 - +0.3 305,956 - +1.0 305,956 - -0.6 305,956 - -0.0 305,956 - +1.0 305,956 - +0.9 305,956 - -0.0 305,956 - +0.7 305,956 - -0.3 305,956 - -2.0 305,956 - +0.3 305,956 - +1.0 305,956 - +2.0 305,956 - +3.3 305,956 - +0.8 306,024 - -1.8 306,034 - -0.4 306,046 - -0.3 306,075 + -2.5 306,075 + +1.0 306,123 + -1.3 306,140 - -0.4 306,152 - -0.9 306,200 + -2.3 306,200 + +0.5 306,200 + -0.3 306,200 + -0.1 306,200 + -0.6 306,208 - +2.6 306,208 - +0.4 306,208 - -0.8 306,208 - +1.8 306,208 - +1.0 306,217 - -0.6 306,220 - +0.9 306,221 + +2.6 306,265 - -0.3 306,273 + +3.8 306,281 - -1.9 306,281 - -4.0 306,293 - -0.0 306,332 + +1.0 306,332 + -2.8 306,332 + +0.1 306,363 - +1.0 306,373 + +2.4 306,381 - -0.0 306,381 - -2.0 306,388 + -0.6 306,388 + -1.1 306,396 - Dshi_0318 0.10 +0.4 306,396 - Dshi_0318 0.10 -0.5 306,396 - Dshi_0318 0.10 +0.7 306,402 + Dshi_0318 0.11 -0.5 306,407 + Dshi_0318 0.11 -0.2 306,458 + Dshi_0318 0.16 +1.7 306,466 - Dshi_0318 0.17 -0.0 306,469 + Dshi_0318 0.17 +0.4 306,474 + Dshi_0318 0.18 -1.2 306,474 + Dshi_0318 0.18 -2.0 306,507 + Dshi_0318 0.21 +0.6 306,507 + Dshi_0318 0.21 +0.9 306,521 + Dshi_0318 0.23 +3.0 306,538 + Dshi_0318 0.24 +0.3 306,541 - Dshi_0318 0.24 +1.0 306,546 - Dshi_0318 0.25 +3.6 306,556 + Dshi_0318 0.26 +3.0 306,661 + Dshi_0318 0.36 +3.3 306,661 + Dshi_0318 0.36 -0.8 306,668 + Dshi_0318 0.37 -3.7 306,669 - Dshi_0318 0.37 +0.1 306,669 - Dshi_0318 0.37 +1.0 306,727 - Dshi_0318 0.43 -0.2 306,914 + Dshi_0318 0.61 +1.0 306,930 + Dshi_0318 0.63 -2.2 306,973 - Dshi_0318 0.67 +1.3 307,042 + Dshi_0318 0.74 +1.2 307,113 + Dshi_0318 0.81 +0.6 307,277 - -2.3 307,277 - +1.3 307,279 + +0.0 307,284 + -0.4 307,284 + +2.2 307,287 - -2.5 307,287 - -0.7 307,292 - +1.0 307,372 + +2.0 307,377 + +0.3 307,380 - +1.0 307,380 - -1.0 307,382 + -3.5 307,421 + +1.0 307,426 + +3.0 307,528 + -1.3 307,573 + Dshi_0319 0.12 -0.0 307,588 + Dshi_0319 0.13 -1.3 307,588 + Dshi_0319 0.13 -1.8 307,598 - Dshi_0319 0.14 -3.0 307,604 + Dshi_0319 0.14 +1.2 307,641 + Dshi_0319 0.17 -2.0 307,674 + Dshi_0319 0.20 -0.2 307,740 - Dshi_0319 0.25 +0.2 307,782 + Dshi_0319 0.29 -0.6 307,887 - Dshi_0319 0.37 -0.8 307,946 - Dshi_0319 0.42 +0.3 307,965 - Dshi_0319 0.43 -1.7 307,968 - Dshi_0319 0.44 +1.0 307,983 - Dshi_0319 0.45 -0.7 307,993 + Dshi_0319 0.46 +1.0 307,995 + Dshi_0319 0.46 -1.5 308,111 + Dshi_0319 0.55 +1.0 308,210 + Dshi_0319 0.63 +0.6 308,210 + Dshi_0319 0.63 +0.5 308,210 + Dshi_0319 0.63 -1.8 308,218 - Dshi_0319 0.64 +1.4 308,218 - Dshi_0319 0.64 -2.0 308,233 - Dshi_0319 0.65 -1.0 308,269 + Dshi_0319 0.68 +0.4
Or see this region's nucleotide sequence