Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0259 and Dshi_0260 are separated by 103 nucleotides Dshi_0260 and Dshi_0261 are separated by 1 nucleotides Dshi_0261 and Dshi_0262 are separated by 352 nucleotides
Dshi_0259: Dshi_0259 - NusG antitermination factor (RefSeq), at 256,673 to 257,206
_0259
Dshi_0260: Dshi_0260 - ribosomal protein L11 (RefSeq), at 257,310 to 257,735
_0260
Dshi_0261: Dshi_0261 - ribosomal protein L1 (RefSeq), at 257,737 to 258,435
_0261
Dshi_0262: Dshi_0262 - hypothetical protein (RefSeq), at 258,788 to 259,516
_0262
Position (kb) 257
258
259 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 258.573 kb on + strand at 258.578 kb on + strand at 258.581 kb on - strand at 258.584 kb on - strand at 258.592 kb on - strand at 258.605 kb on + strand at 258.658 kb on - strand at 258.663 kb on + strand at 258.715 kb on - strand at 258.811 kb on + strand at 258.822 kb on + strand at 258.827 kb on + strand at 258.827 kb on + strand at 258.828 kb on + strand at 258.835 kb on - strand at 258.869 kb on + strand, within Dshi_0262 at 259.039 kb on + strand, within Dshi_0262 at 259.173 kb on + strand, within Dshi_0262 at 259.217 kb on + strand, within Dshi_0262 at 259.276 kb on + strand, within Dshi_0262 at 259.318 kb on - strand, within Dshi_0262
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 258,573 + +0.7 258,578 + -1.3 258,581 - +0.0 258,584 - +3.4 258,592 - +2.2 258,605 + +0.3 258,658 - -2.5 258,663 + +0.0 258,715 - +0.8 258,811 + -1.4 258,822 + +1.5 258,827 + +3.2 258,827 + +0.9 258,828 + +0.2 258,835 - +4.6 258,869 + Dshi_0262 0.11 -4.3 259,039 + Dshi_0262 0.34 +1.0 259,173 + Dshi_0262 0.53 +0.8 259,217 + Dshi_0262 0.59 +2.0 259,276 + Dshi_0262 0.67 +0.4 259,318 - Dshi_0262 0.73 +1.2
Or see this region's nucleotide sequence