Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0250 and Dshi_0251 are separated by 3 nucleotides Dshi_0251 and Dshi_0252 are separated by 77 nucleotides Dshi_0252 and Dshi_0253 are separated by 55 nucleotides
Dshi_0250: Dshi_0250 - acriflavin resistance protein (RefSeq), at 246,745 to 249,237
_0250
Dshi_0251: Dshi_0251 - efflux transporter, RND family, MFP subunit (RefSeq), at 249,241 to 250,392
_0251
Dshi_0252: Dshi_0252 - transcriptional regulator, TetR family (RefSeq), at 250,470 to 251,144
_0252
Dshi_0253: Dshi_0253 - AMP-dependent synthetase and ligase (RefSeq), at 251,200 to 252,759
_0253
Position (kb) 249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 248.251 kb on + strand, within Dshi_0250 at 248.366 kb on + strand, within Dshi_0250 at 248.374 kb on - strand, within Dshi_0250 at 248.432 kb on - strand, within Dshi_0250 at 248.483 kb on - strand, within Dshi_0250 at 248.521 kb on + strand, within Dshi_0250 at 248.535 kb on - strand, within Dshi_0250 at 248.588 kb on + strand, within Dshi_0250 at 248.666 kb on + strand, within Dshi_0250 at 248.693 kb on - strand, within Dshi_0250 at 248.818 kb on + strand, within Dshi_0250 at 248.861 kb on + strand, within Dshi_0250 at 248.870 kb on + strand, within Dshi_0250 at 248.960 kb on + strand, within Dshi_0250 at 249.026 kb on - strand at 249.078 kb on + strand at 249.090 kb on + strand at 249.201 kb on - strand at 249.480 kb on + strand, within Dshi_0251 at 249.725 kb on - strand, within Dshi_0251 at 249.731 kb on + strand, within Dshi_0251 at 249.939 kb on - strand, within Dshi_0251 at 250.245 kb on - strand, within Dshi_0251 at 250.303 kb on + strand at 250.303 kb on + strand at 250.303 kb on + strand at 250.383 kb on + strand at 250.555 kb on + strand, within Dshi_0252 at 250.612 kb on - strand, within Dshi_0252 at 250.675 kb on + strand, within Dshi_0252 at 250.728 kb on - strand, within Dshi_0252 at 250.801 kb on + strand, within Dshi_0252 at 250.823 kb on - strand, within Dshi_0252 at 251.019 kb on + strand, within Dshi_0252 at 251.146 kb on - strand at 251.185 kb on - strand at 251.227 kb on + strand at 251.244 kb on - strand at 251.273 kb on - strand at 251.351 kb on - strand at 251.375 kb on + strand, within Dshi_0253
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 248,251 + Dshi_0250 0.60 +1.5 248,366 + Dshi_0250 0.65 -1.0 248,374 - Dshi_0250 0.65 -1.6 248,432 - Dshi_0250 0.68 -3.3 248,483 - Dshi_0250 0.70 +0.3 248,521 + Dshi_0250 0.71 +0.0 248,535 - Dshi_0250 0.72 -0.0 248,588 + Dshi_0250 0.74 +1.7 248,666 + Dshi_0250 0.77 +2.2 248,693 - Dshi_0250 0.78 -1.3 248,818 + Dshi_0250 0.83 -2.9 248,861 + Dshi_0250 0.85 +0.0 248,870 + Dshi_0250 0.85 -2.0 248,960 + Dshi_0250 0.89 +0.0 249,026 - -1.0 249,078 + +1.0 249,090 + +0.0 249,201 - -1.0 249,480 + Dshi_0251 0.21 +1.0 249,725 - Dshi_0251 0.42 -0.1 249,731 + Dshi_0251 0.43 +0.0 249,939 - Dshi_0251 0.61 +1.0 250,245 - Dshi_0251 0.87 +1.5 250,303 + +1.0 250,303 + -0.8 250,303 + -0.2 250,383 + -0.8 250,555 + Dshi_0252 0.13 +0.9 250,612 - Dshi_0252 0.21 -1.8 250,675 + Dshi_0252 0.30 +2.6 250,728 - Dshi_0252 0.38 +3.6 250,801 + Dshi_0252 0.49 +1.0 250,823 - Dshi_0252 0.52 +1.0 251,019 + Dshi_0252 0.81 +1.5 251,146 - +1.6 251,185 - -0.3 251,227 + +1.0 251,244 - +3.0 251,273 - +2.3 251,351 - +1.3 251,375 + Dshi_0253 0.11 -0.5
Or see this region's nucleotide sequence