Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0232 and Dshi_0233 are separated by 155 nucleotides Dshi_0233 and Dshi_0234 are separated by 72 nucleotides
Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473
_0232
Dshi_0233: Dshi_0233 - Citrate transporter (RefSeq), at 229,629 to 231,512
_0233
Dshi_0234: Dshi_0234 - hypothetical protein (RefSeq), at 231,585 to 232,649
_0234
Position (kb) 229
230
231
232 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 228.686 kb on + strand, within Dshi_0232 at 228.710 kb on + strand, within Dshi_0232 at 228.726 kb on - strand, within Dshi_0232 at 228.735 kb on + strand, within Dshi_0232 at 228.869 kb on + strand, within Dshi_0232 at 228.919 kb on - strand, within Dshi_0232 at 228.938 kb on - strand, within Dshi_0232 at 228.992 kb on - strand, within Dshi_0232 at 229.025 kb on - strand, within Dshi_0232 at 229.063 kb on + strand, within Dshi_0232 at 229.197 kb on - strand, within Dshi_0232 at 229.277 kb on - strand, within Dshi_0232 at 229.307 kb on + strand, within Dshi_0232 at 229.523 kb on + strand at 229.615 kb on + strand at 229.615 kb on + strand at 229.615 kb on + strand at 229.623 kb on - strand at 229.623 kb on - strand at 229.623 kb on - strand at 229.634 kb on - strand at 229.777 kb on - strand at 229.798 kb on - strand at 229.822 kb on + strand, within Dshi_0233 at 229.822 kb on + strand, within Dshi_0233 at 229.822 kb on + strand, within Dshi_0233 at 229.884 kb on + strand, within Dshi_0233 at 230.015 kb on + strand, within Dshi_0233 at 230.079 kb on + strand, within Dshi_0233 at 230.136 kb on - strand, within Dshi_0233 at 230.258 kb on + strand, within Dshi_0233 at 230.291 kb on + strand, within Dshi_0233 at 230.292 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.475 kb on - strand, within Dshi_0233 at 230.601 kb on - strand, within Dshi_0233 at 230.629 kb on - strand, within Dshi_0233 at 230.639 kb on + strand, within Dshi_0233 at 230.679 kb on - strand, within Dshi_0233 at 230.791 kb on - strand, within Dshi_0233 at 230.806 kb on + strand, within Dshi_0233 at 230.849 kb on - strand, within Dshi_0233 at 231.047 kb on - strand, within Dshi_0233 at 231.096 kb on - strand, within Dshi_0233 at 231.112 kb on + strand, within Dshi_0233 at 231.183 kb on - strand, within Dshi_0233 at 231.387 kb on + strand at 231.400 kb on - strand at 231.467 kb on + strand at 231.475 kb on - strand at 231.488 kb on - strand at 231.499 kb on + strand at 231.543 kb on + strand at 231.545 kb on - strand at 231.551 kb on - strand at 231.582 kb on + strand at 231.588 kb on + strand at 231.617 kb on + strand at 231.669 kb on - strand at 231.900 kb on + strand, within Dshi_0234 at 231.935 kb on + strand, within Dshi_0234 at 232.026 kb on - strand, within Dshi_0234 at 232.044 kb on - strand, within Dshi_0234
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 228,686 + Dshi_0232 0.26 -2.0 228,710 + Dshi_0232 0.29 -3.4 228,726 - Dshi_0232 0.30 -0.9 228,735 + Dshi_0232 0.31 +1.0 228,869 + Dshi_0232 0.44 +2.0 228,919 - Dshi_0232 0.48 +2.0 228,938 - Dshi_0232 0.50 +0.9 228,992 - Dshi_0232 0.55 +3.6 229,025 - Dshi_0232 0.58 +0.9 229,063 + Dshi_0232 0.62 -3.4 229,197 - Dshi_0232 0.74 +1.1 229,277 - Dshi_0232 0.82 +2.0 229,307 + Dshi_0232 0.84 +0.9 229,523 + +2.0 229,615 + -3.2 229,615 + -1.5 229,615 + -1.8 229,623 - +1.6 229,623 - +3.5 229,623 - +1.0 229,634 - -2.0 229,777 - +0.0 229,798 - -1.8 229,822 + Dshi_0233 0.10 +0.4 229,822 + Dshi_0233 0.10 -0.8 229,822 + Dshi_0233 0.10 -0.6 229,884 + Dshi_0233 0.14 +2.3 230,015 + Dshi_0233 0.20 -0.5 230,079 + Dshi_0233 0.24 -1.5 230,136 - Dshi_0233 0.27 -1.3 230,258 + Dshi_0233 0.33 -3.9 230,291 + Dshi_0233 0.35 +1.0 230,292 - Dshi_0233 0.35 -0.4 230,428 - Dshi_0233 0.42 +1.0 230,428 - Dshi_0233 0.42 +0.2 230,428 - Dshi_0233 0.42 +1.2 230,475 - Dshi_0233 0.45 -0.6 230,601 - Dshi_0233 0.52 -0.9 230,629 - Dshi_0233 0.53 +0.3 230,639 + Dshi_0233 0.54 +0.0 230,679 - Dshi_0233 0.56 +1.0 230,791 - Dshi_0233 0.62 -0.3 230,806 + Dshi_0233 0.62 +4.5 230,849 - Dshi_0233 0.65 -2.4 231,047 - Dshi_0233 0.75 -1.0 231,096 - Dshi_0233 0.78 -0.1 231,112 + Dshi_0233 0.79 -0.2 231,183 - Dshi_0233 0.82 -0.8 231,387 + +1.0 231,400 - -1.0 231,467 + +1.0 231,475 - -1.5 231,488 - +0.7 231,499 + -2.5 231,543 + -3.1 231,545 - -0.6 231,551 - +0.1 231,582 + +0.9 231,588 + -3.4 231,617 + +1.0 231,669 - +1.0 231,900 + Dshi_0234 0.30 -0.7 231,935 + Dshi_0234 0.33 +0.4 232,026 - Dshi_0234 0.41 -1.8 232,044 - Dshi_0234 0.43 +0.4
Or see this region's nucleotide sequence