Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0148

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0146 and Dshi_0147 are separated by 285 nucleotidesDshi_0147 and Dshi_0148 are separated by 30 nucleotidesDshi_0148 and Dshi_0149 overlap by 4 nucleotides Dshi_0146: Dshi_0146 - Rhodanese domain protein (RefSeq), at 146,231 to 147,106 _0146 Dshi_0147: Dshi_0147 - SsrA-binding protein (RefSeq), at 147,392 to 147,874 _0147 Dshi_0148: Dshi_0148 - GCN5-related N-acetyltransferase (RefSeq), at 147,905 to 148,354 _0148 Dshi_0149: Dshi_0149 - dihydrodipicolinate synthase (RefSeq), at 148,351 to 149,226 _0149 Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2 3at 147.023 kb on + strandat 147.398 kb on - strandat 147.904 kb on - strandat 147.995 kb on + strand, within Dshi_0148at 148.081 kb on + strand, within Dshi_0148at 148.155 kb on - strand, within Dshi_0148at 148.334 kb on + strandat 149.245 kb on + strandat 149.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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147,023 + +0.0
147,398 - -2.0
147,904 - +1.0
147,995 + Dshi_0148 0.20 +0.8
148,081 + Dshi_0148 0.39 -2.5
148,155 - Dshi_0148 0.56 -0.7
148,334 + +1.4
149,245 + +0.7
149,353 + +3.0

Or see this region's nucleotide sequence