Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0135 and Dshi_0136 are separated by 50 nucleotides Dshi_0136 and Dshi_0137 overlap by 4 nucleotides Dshi_0137 and Dshi_0138 are separated by 22 nucleotides
Dshi_0135: Dshi_0135 - protein of unknown function DUF482 (RefSeq), at 133,351 to 134,571
_0135
Dshi_0136: Dshi_0136 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 134,622 to 135,395
_0136
Dshi_0137: Dshi_0137 - Endoribonuclease L-PSP (RefSeq), at 135,392 to 135,859
_0137
Dshi_0138: Dshi_0138 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 135,882 to 137,189
_0138
Position (kb) 134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.634 kb on - strand, within Dshi_0135 at 133.635 kb on + strand, within Dshi_0135 at 133.635 kb on + strand, within Dshi_0135 at 133.645 kb on - strand, within Dshi_0135 at 133.711 kb on + strand, within Dshi_0135 at 133.712 kb on + strand, within Dshi_0135 at 133.781 kb on + strand, within Dshi_0135 at 133.896 kb on - strand, within Dshi_0135 at 134.095 kb on + strand, within Dshi_0135 at 134.103 kb on - strand, within Dshi_0135 at 134.116 kb on - strand, within Dshi_0135 at 134.137 kb on + strand, within Dshi_0135 at 134.178 kb on + strand, within Dshi_0135 at 134.178 kb on + strand, within Dshi_0135 at 134.215 kb on - strand, within Dshi_0135 at 134.215 kb on - strand, within Dshi_0135 at 134.236 kb on + strand, within Dshi_0135 at 134.331 kb on + strand, within Dshi_0135 at 134.339 kb on - strand, within Dshi_0135 at 134.485 kb on - strand at 134.603 kb on - strand at 134.779 kb on - strand, within Dshi_0136 at 134.922 kb on - strand, within Dshi_0136 at 134.991 kb on - strand, within Dshi_0136 at 135.012 kb on - strand, within Dshi_0136 at 135.098 kb on - strand, within Dshi_0136 at 135.227 kb on + strand, within Dshi_0136 at 135.381 kb on - strand at 135.584 kb on - strand, within Dshi_0137 at 135.698 kb on - strand, within Dshi_0137 at 135.739 kb on + strand, within Dshi_0137 at 135.814 kb on + strand at 135.820 kb on + strand at 135.833 kb on - strand at 135.890 kb on + strand at 135.993 kb on - strand at 136.012 kb on - strand at 136.058 kb on - strand, within Dshi_0138 at 136.225 kb on + strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.347 kb on - strand, within Dshi_0138
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 133,634 - Dshi_0135 0.23 +1.1 133,635 + Dshi_0135 0.23 -2.7 133,635 + Dshi_0135 0.23 -0.8 133,645 - Dshi_0135 0.24 -0.3 133,711 + Dshi_0135 0.29 -0.4 133,712 + Dshi_0135 0.30 -1.9 133,781 + Dshi_0135 0.35 +1.2 133,896 - Dshi_0135 0.45 +0.0 134,095 + Dshi_0135 0.61 -0.1 134,103 - Dshi_0135 0.62 -0.4 134,116 - Dshi_0135 0.63 +2.6 134,137 + Dshi_0135 0.64 -0.8 134,178 + Dshi_0135 0.68 -1.2 134,178 + Dshi_0135 0.68 +1.1 134,215 - Dshi_0135 0.71 +0.0 134,215 - Dshi_0135 0.71 +0.7 134,236 + Dshi_0135 0.72 +2.2 134,331 + Dshi_0135 0.80 +0.4 134,339 - Dshi_0135 0.81 +1.0 134,485 - -2.3 134,603 - +1.7 134,779 - Dshi_0136 0.20 -0.9 134,922 - Dshi_0136 0.39 +0.8 134,991 - Dshi_0136 0.48 -0.1 135,012 - Dshi_0136 0.50 -0.0 135,098 - Dshi_0136 0.61 +1.2 135,227 + Dshi_0136 0.78 +0.8 135,381 - -0.2 135,584 - Dshi_0137 0.41 +1.1 135,698 - Dshi_0137 0.65 -1.6 135,739 + Dshi_0137 0.74 +1.0 135,814 + +1.0 135,820 + +2.5 135,833 - -0.6 135,890 + +0.2 135,993 - +1.0 136,012 - -2.0 136,058 - Dshi_0138 0.13 +0.4 136,225 + Dshi_0138 0.26 +0.2 136,251 - Dshi_0138 0.28 -2.2 136,251 - Dshi_0138 0.28 -1.8 136,347 - Dshi_0138 0.36 +0.5
Or see this region's nucleotide sequence