Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0133

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0132 and Dshi_0133 are separated by 103 nucleotidesDshi_0133 and Dshi_0134 overlap by 4 nucleotidesDshi_0134 and Dshi_0135 overlap by 1 nucleotides Dshi_0132: Dshi_0132 - FolC bifunctional protein (RefSeq), at 130,730 to 131,998 _0132 Dshi_0133: Dshi_0133 - type I secretion target repeat protein (RefSeq), at 132,102 to 133,061 _0133 Dshi_0134: Dshi_0134 - transcriptional coactivator/pterin dehydratase (RefSeq), at 133,058 to 133,351 _0134 Dshi_0135: Dshi_0135 - protein of unknown function DUF482 (RefSeq), at 133,351 to 134,571 _0135 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 132.028 kb on + strandat 132.135 kb on + strandat 132.143 kb on - strandat 132.272 kb on + strand, within Dshi_0133at 132.323 kb on + strand, within Dshi_0133at 132.331 kb on - strand, within Dshi_0133at 132.331 kb on - strand, within Dshi_0133at 132.343 kb on + strand, within Dshi_0133at 132.345 kb on + strand, within Dshi_0133at 132.345 kb on + strand, within Dshi_0133at 132.357 kb on + strand, within Dshi_0133at 132.727 kb on + strand, within Dshi_0133at 132.782 kb on + strand, within Dshi_0133at 132.795 kb on + strand, within Dshi_0133at 132.805 kb on + strand, within Dshi_0133at 132.839 kb on - strand, within Dshi_0133at 133.092 kb on + strand, within Dshi_0134at 133.191 kb on + strand, within Dshi_0134at 133.298 kb on + strand, within Dshi_0134at 133.298 kb on + strand, within Dshi_0134at 133.349 kb on + strandat 133.380 kb on + strandat 133.380 kb on + strandat 133.552 kb on - strand, within Dshi_0135at 133.634 kb on - strand, within Dshi_0135at 133.635 kb on + strand, within Dshi_0135at 133.635 kb on + strand, within Dshi_0135at 133.645 kb on - strand, within Dshi_0135at 133.711 kb on + strand, within Dshi_0135at 133.712 kb on + strand, within Dshi_0135at 133.781 kb on + strand, within Dshi_0135at 133.896 kb on - strand, within Dshi_0135

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
remove
132,028 + +0.2
132,135 + +1.0
132,143 - +0.2
132,272 + Dshi_0133 0.18 -1.6
132,323 + Dshi_0133 0.23 +1.6
132,331 - Dshi_0133 0.24 +0.0
132,331 - Dshi_0133 0.24 +0.4
132,343 + Dshi_0133 0.25 -0.2
132,345 + Dshi_0133 0.25 -1.0
132,345 + Dshi_0133 0.25 +1.0
132,357 + Dshi_0133 0.27 +1.0
132,727 + Dshi_0133 0.65 -1.2
132,782 + Dshi_0133 0.71 -1.8
132,795 + Dshi_0133 0.72 -0.5
132,805 + Dshi_0133 0.73 +0.4
132,839 - Dshi_0133 0.77 +2.2
133,092 + Dshi_0134 0.12 +5.0
133,191 + Dshi_0134 0.45 +0.4
133,298 + Dshi_0134 0.82 +0.4
133,298 + Dshi_0134 0.82 +0.0
133,349 + -0.7
133,380 + +0.0
133,380 + +1.8
133,552 - Dshi_0135 0.16 +1.0
133,634 - Dshi_0135 0.23 +1.1
133,635 + Dshi_0135 0.23 -2.7
133,635 + Dshi_0135 0.23 -0.8
133,645 - Dshi_0135 0.24 -0.3
133,711 + Dshi_0135 0.29 -0.4
133,712 + Dshi_0135 0.30 -1.9
133,781 + Dshi_0135 0.35 +1.2
133,896 - Dshi_0135 0.45 +0.0

Or see this region's nucleotide sequence