Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0061 and Dshi_0062 are separated by 61 nucleotides Dshi_0062 and Dshi_0063 are separated by 122 nucleotides Dshi_0063 and Dshi_0064 overlap by 14 nucleotides
Dshi_0061: Dshi_0061 - Amidase (RefSeq), at 60,992 to 62,323
_0061
Dshi_0062: Dshi_0062 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 62,385 to 63,650
_0062
Dshi_0063: Dshi_0063 - Inositol-phosphate phosphatase (RefSeq), at 63,773 to 64,567
_0063
Dshi_0064: Dshi_0064 - peptidase U62 modulator of DNA gyrase (RefSeq), at 64,554 to 65,900
_0064
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 61.453 kb on + strand, within Dshi_0061 at 61.488 kb on + strand, within Dshi_0061 at 61.652 kb on + strand, within Dshi_0061 at 61.654 kb on + strand, within Dshi_0061 at 61.748 kb on - strand, within Dshi_0061 at 61.775 kb on - strand, within Dshi_0061 at 61.822 kb on + strand, within Dshi_0061 at 61.860 kb on + strand, within Dshi_0061 at 61.920 kb on - strand, within Dshi_0061 at 62.077 kb on + strand, within Dshi_0061 at 62.164 kb on + strand, within Dshi_0061 at 62.254 kb on + strand at 62.292 kb on + strand at 62.395 kb on + strand at 62.419 kb on - strand at 63.616 kb on - strand at 63.645 kb on + strand at 63.645 kb on + strand at 63.653 kb on - strand at 63.698 kb on - strand at 63.711 kb on - strand at 63.857 kb on - strand, within Dshi_0063 at 63.857 kb on - strand, within Dshi_0063 at 63.891 kb on - strand, within Dshi_0063 at 64.002 kb on - strand, within Dshi_0063 at 64.157 kb on + strand, within Dshi_0063 at 64.188 kb on + strand, within Dshi_0063 at 64.259 kb on + strand, within Dshi_0063 at 64.264 kb on + strand, within Dshi_0063 at 64.479 kb on + strand, within Dshi_0063 at 64.569 kb on + strand at 64.606 kb on - strand at 64.613 kb on - strand at 64.641 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 61,453 + Dshi_0061 0.35 +3.6 61,488 + Dshi_0061 0.37 -1.0 61,652 + Dshi_0061 0.50 +1.2 61,654 + Dshi_0061 0.50 +1.5 61,748 - Dshi_0061 0.57 -0.4 61,775 - Dshi_0061 0.59 +0.0 61,822 + Dshi_0061 0.62 +1.0 61,860 + Dshi_0061 0.65 -1.3 61,920 - Dshi_0061 0.70 -2.6 62,077 + Dshi_0061 0.81 +4.0 62,164 + Dshi_0061 0.88 +1.0 62,254 + +0.4 62,292 + -1.8 62,395 + +2.0 62,419 - +1.6 63,616 - -2.7 63,645 + -0.6 63,645 + +2.8 63,653 - -1.0 63,698 - +1.2 63,711 - +1.6 63,857 - Dshi_0063 0.11 +0.0 63,857 - Dshi_0063 0.11 +2.8 63,891 - Dshi_0063 0.15 -1.8 64,002 - Dshi_0063 0.29 -0.2 64,157 + Dshi_0063 0.48 -1.3 64,188 + Dshi_0063 0.52 +1.0 64,259 + Dshi_0063 0.61 +0.7 64,264 + Dshi_0063 0.62 +0.0 64,479 + Dshi_0063 0.89 +1.0 64,569 + +0.0 64,606 - +1.0 64,613 - +1.0 64,641 + +0.0
Or see this region's nucleotide sequence