Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0043 and Dshi_0044 are separated by 300 nucleotides Dshi_0044 and Dshi_0045 are separated by 6 nucleotides Dshi_0045 and Dshi_0046 are separated by 300 nucleotides
Dshi_0043: Dshi_0043 - hypothetical protein (RefSeq), at 43,903 to 44,862
_0043
Dshi_0044: Dshi_0044 - hypothetical protein (RefSeq), at 45,163 to 45,633
_0044
Dshi_0045: Dshi_0045 - UspA domain protein (RefSeq), at 45,640 to 46,014
_0045
Dshi_0046: Dshi_0046 - hypothetical protein (RefSeq), at 46,315 to 46,704
_0046
Position (kb) 45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 45.114 kb on + strand at 45.122 kb on - strand at 45.156 kb on - strand at 45.156 kb on - strand at 45.199 kb on - strand at 45.204 kb on - strand at 45.235 kb on - strand, within Dshi_0044 at 45.235 kb on - strand, within Dshi_0044 at 45.333 kb on - strand, within Dshi_0044 at 45.360 kb on - strand, within Dshi_0044 at 45.430 kb on - strand, within Dshi_0044 at 45.444 kb on - strand, within Dshi_0044 at 45.451 kb on + strand, within Dshi_0044 at 45.473 kb on - strand, within Dshi_0044 at 45.495 kb on - strand, within Dshi_0044 at 45.540 kb on + strand, within Dshi_0044 at 45.540 kb on + strand, within Dshi_0044 at 45.673 kb on + strand at 45.683 kb on + strand, within Dshi_0045 at 45.691 kb on - strand, within Dshi_0045 at 45.712 kb on + strand, within Dshi_0045 at 45.760 kb on - strand, within Dshi_0045 at 45.783 kb on - strand, within Dshi_0045 at 45.881 kb on + strand, within Dshi_0045 at 45.886 kb on + strand, within Dshi_0045 at 45.971 kb on - strand, within Dshi_0045 at 46.018 kb on - strand at 46.050 kb on - strand at 46.139 kb on - strand at 46.146 kb on + strand at 46.150 kb on - strand at 46.172 kb on - strand at 46.220 kb on + strand at 46.290 kb on - strand at 46.325 kb on + strand at 46.348 kb on - strand at 46.427 kb on + strand, within Dshi_0046 at 46.427 kb on - strand, within Dshi_0046 at 46.453 kb on - strand, within Dshi_0046 at 46.460 kb on + strand, within Dshi_0046 at 46.468 kb on - strand, within Dshi_0046 at 46.512 kb on - strand, within Dshi_0046 at 46.512 kb on - strand, within Dshi_0046 at 46.550 kb on - strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.596 kb on + strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.604 kb on - strand, within Dshi_0046 at 46.609 kb on + strand, within Dshi_0046 at 46.617 kb on - strand, within Dshi_0046 at 46.617 kb on - strand, within Dshi_0046
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 45,114 + -1.6 45,122 - -3.1 45,156 - -3.3 45,156 - -1.8 45,199 - -1.0 45,204 - +1.0 45,235 - Dshi_0044 0.15 +1.8 45,235 - Dshi_0044 0.15 -3.1 45,333 - Dshi_0044 0.36 +1.0 45,360 - Dshi_0044 0.42 +1.0 45,430 - Dshi_0044 0.57 -3.5 45,444 - Dshi_0044 0.60 -1.0 45,451 + Dshi_0044 0.61 +1.0 45,473 - Dshi_0044 0.66 -2.7 45,495 - Dshi_0044 0.70 -3.1 45,540 + Dshi_0044 0.80 -2.0 45,540 + Dshi_0044 0.80 -3.4 45,673 + +0.1 45,683 + Dshi_0045 0.11 -2.0 45,691 - Dshi_0045 0.14 -0.7 45,712 + Dshi_0045 0.19 -3.5 45,760 - Dshi_0045 0.32 +2.7 45,783 - Dshi_0045 0.38 +1.0 45,881 + Dshi_0045 0.64 -2.5 45,886 + Dshi_0045 0.66 +1.0 45,971 - Dshi_0045 0.88 -3.6 46,018 - -0.8 46,050 - -0.9 46,139 - -0.7 46,146 + -3.6 46,150 - +0.2 46,172 - -3.3 46,220 + +0.0 46,290 - +0.4 46,325 + -2.7 46,348 - -0.1 46,427 + Dshi_0046 0.29 -0.9 46,427 - Dshi_0046 0.29 -0.5 46,453 - Dshi_0046 0.35 -1.3 46,460 + Dshi_0046 0.37 -1.0 46,468 - Dshi_0046 0.39 +3.0 46,512 - Dshi_0046 0.51 +2.3 46,512 - Dshi_0046 0.51 -0.5 46,550 - Dshi_0046 0.60 -2.2 46,596 + Dshi_0046 0.72 -0.1 46,596 + Dshi_0046 0.72 -1.2 46,596 + Dshi_0046 0.72 -1.7 46,596 + Dshi_0046 0.72 +0.6 46,604 - Dshi_0046 0.74 -1.0 46,604 - Dshi_0046 0.74 -0.6 46,604 - Dshi_0046 0.74 +0.5 46,604 - Dshi_0046 0.74 -0.3 46,609 + Dshi_0046 0.75 -0.6 46,617 - Dshi_0046 0.77 +0.0 46,617 - Dshi_0046 0.77 -0.4
Or see this region's nucleotide sequence