Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0036 and Dshi_0037 are separated by 340 nucleotides Dshi_0037 and Dshi_0038 are separated by 215 nucleotides
Dshi_0036: Dshi_0036 - exodeoxyribonuclease III Xth (RefSeq), at 38,563 to 39,351
_0036
Dshi_0037: Dshi_0037 - LPXTG-motif cell wall anchor domain (RefSeq), at 39,692 to 40,216
_0037
Dshi_0038: Dshi_0038 - two component transcriptional regulator, winged helix family (RefSeq), at 40,432 to 41,118
_0038
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 38.794 kb on - strand, within Dshi_0036 at 38.846 kb on + strand, within Dshi_0036 at 39.021 kb on - strand, within Dshi_0036 at 39.083 kb on + strand, within Dshi_0036 at 39.128 kb on - strand, within Dshi_0036 at 39.162 kb on - strand, within Dshi_0036 at 39.176 kb on - strand, within Dshi_0036 at 39.295 kb on - strand at 39.317 kb on + strand at 39.325 kb on - strand at 39.341 kb on + strand at 39.371 kb on - strand at 39.410 kb on + strand at 39.424 kb on - strand at 39.482 kb on + strand at 39.520 kb on - strand at 39.520 kb on - strand at 39.525 kb on - strand at 39.528 kb on + strand at 39.637 kb on - strand at 39.642 kb on - strand at 39.644 kb on - strand at 39.649 kb on + strand at 39.669 kb on + strand at 39.669 kb on + strand at 39.692 kb on - strand at 39.694 kb on + strand at 39.706 kb on + strand at 39.786 kb on - strand, within Dshi_0037 at 39.930 kb on + strand, within Dshi_0037 at 40.212 kb on + strand at 40.212 kb on + strand at 40.327 kb on + strand at 40.370 kb on + strand at 40.713 kb on + strand, within Dshi_0038 at 40.948 kb on + strand, within Dshi_0038 at 41.122 kb on + strand at 41.124 kb on + strand at 41.172 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 38,794 - Dshi_0036 0.29 +0.6 38,846 + Dshi_0036 0.36 +1.0 39,021 - Dshi_0036 0.58 -1.3 39,083 + Dshi_0036 0.66 -2.2 39,128 - Dshi_0036 0.72 +1.9 39,162 - Dshi_0036 0.76 +0.3 39,176 - Dshi_0036 0.78 +1.0 39,295 - -1.3 39,317 + -2.3 39,325 - +4.2 39,341 + -1.6 39,371 - -0.8 39,410 + -3.0 39,424 - +3.5 39,482 + +1.3 39,520 - +3.0 39,520 - +0.6 39,525 - -0.6 39,528 + -1.0 39,637 - -2.3 39,642 - +2.4 39,644 - -2.6 39,649 + +2.6 39,669 + +1.7 39,669 + +3.6 39,692 - -0.6 39,694 + +1.0 39,706 + -2.1 39,786 - Dshi_0037 0.18 +1.3 39,930 + Dshi_0037 0.45 +1.0 40,212 + +1.6 40,212 + +1.5 40,327 + +0.4 40,370 + +1.7 40,713 + Dshi_0038 0.41 +1.0 40,948 + Dshi_0038 0.75 +1.0 41,122 + +2.6 41,124 + +0.0 41,172 + +0.4
Or see this region's nucleotide sequence