Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0032 and Dshi_0033 are separated by 160 nucleotides Dshi_0033 and Dshi_0034 overlap by 4 nucleotides Dshi_0034 and Dshi_0035 are separated by 26 nucleotides
Dshi_0032: Dshi_0032 - Three-deoxy-D-manno-octulosonic-acid transferase domain protein (RefSeq), at 35,239 to 36,555
_0032
Dshi_0033: Dshi_0033 - protein of unknown function DUF343 (RefSeq), at 36,716 to 36,907
_0033
Dshi_0034: Dshi_0034 - peptidase S16 lon domain protein (RefSeq), at 36,904 to 37,551
_0034
Dshi_0035: Dshi_0035 - Thioredoxin domain (RefSeq), at 37,578 to 38,489
_0035
Position (kb) 36
37 Strain fitness (log2 ratio) -1
0
1
2 at 36.701 kb on - strand at 36.789 kb on - strand, within Dshi_0033 at 36.854 kb on - strand, within Dshi_0033 at 36.962 kb on - strand at 37.078 kb on - strand, within Dshi_0034 at 37.097 kb on - strand, within Dshi_0034 at 37.212 kb on - strand, within Dshi_0034 at 37.243 kb on - strand, within Dshi_0034 at 37.364 kb on + strand, within Dshi_0034 at 37.366 kb on + strand, within Dshi_0034 at 37.724 kb on + strand, within Dshi_0035 at 37.780 kb on - strand, within Dshi_0035 at 37.790 kb on - strand, within Dshi_0035
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 36,701 - +1.0 36,789 - Dshi_0033 0.38 -1.0 36,854 - Dshi_0033 0.72 +1.0 36,962 - +1.0 37,078 - Dshi_0034 0.27 +2.4 37,097 - Dshi_0034 0.30 +2.1 37,212 - Dshi_0034 0.48 -0.1 37,243 - Dshi_0034 0.52 +1.0 37,364 + Dshi_0034 0.71 -1.6 37,366 + Dshi_0034 0.71 -1.6 37,724 + Dshi_0035 0.16 +0.5 37,780 - Dshi_0035 0.22 +0.5 37,790 - Dshi_0035 0.23 +1.3
Or see this region's nucleotide sequence