Strain Fitness in Marinobacter adhaerens HP15 around HP15_52

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_51 and HP15_52 are separated by 388 nucleotidesHP15_52 and HP15_53 are separated by 109 nucleotides HP15_51: HP15_51 - cytochrome P450, at 55,212 to 56,486 _51 HP15_52: HP15_52 - amidohydrolase 2, at 56,875 to 58,182 _52 HP15_53: HP15_53 - acyl-CoA dehydrogenase domain protein, at 58,292 to 59,443 _53 Position (kb) 56 57 58 59Strain fitness (log2 ratio) -2 -1 0 1at 56.056 kb on - strand, within HP15_51at 56.056 kb on - strand, within HP15_51at 56.084 kb on + strand, within HP15_51at 56.084 kb on + strand, within HP15_51at 56.092 kb on - strand, within HP15_51at 56.163 kb on + strand, within HP15_51at 56.171 kb on - strand, within HP15_51at 56.171 kb on - strand, within HP15_51at 56.185 kb on + strand, within HP15_51at 56.185 kb on + strand, within HP15_51at 56.185 kb on + strand, within HP15_51at 56.185 kb on + strand, within HP15_51at 56.306 kb on - strand, within HP15_51at 56.306 kb on - strand, within HP15_51at 56.379 kb on + strandat 56.379 kb on + strandat 56.379 kb on + strandat 56.379 kb on + strandat 56.387 kb on - strandat 56.387 kb on - strandat 56.387 kb on - strandat 56.414 kb on + strandat 56.421 kb on - strandat 56.440 kb on - strandat 56.445 kb on + strandat 56.453 kb on - strandat 56.454 kb on + strandat 56.455 kb on - strandat 56.557 kb on + strandat 56.663 kb on + strandat 56.681 kb on - strandat 56.698 kb on + strandat 56.706 kb on - strandat 56.712 kb on + strandat 56.732 kb on - strandat 56.936 kb on - strandat 56.944 kb on - strandat 56.961 kb on + strandat 57.022 kb on + strand, within HP15_52at 57.063 kb on - strand, within HP15_52at 57.074 kb on - strand, within HP15_52at 57.084 kb on - strand, within HP15_52at 57.184 kb on + strand, within HP15_52at 57.299 kb on - strand, within HP15_52at 57.351 kb on - strand, within HP15_52at 57.383 kb on + strand, within HP15_52at 57.476 kb on + strand, within HP15_52at 57.486 kb on + strand, within HP15_52at 57.539 kb on + strand, within HP15_52at 57.547 kb on - strand, within HP15_52at 57.575 kb on - strand, within HP15_52at 57.668 kb on + strand, within HP15_52at 57.671 kb on + strand, within HP15_52at 57.697 kb on - strand, within HP15_52at 57.730 kb on + strand, within HP15_52at 57.732 kb on - strand, within HP15_52at 57.738 kb on - strand, within HP15_52at 57.738 kb on - strand, within HP15_52at 57.866 kb on - strand, within HP15_52at 57.913 kb on + strand, within HP15_52at 57.922 kb on - strand, within HP15_52at 57.924 kb on + strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.948 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.989 kb on + strand, within HP15_52at 57.995 kb on - strand, within HP15_52at 57.997 kb on - strand, within HP15_52at 58.037 kb on - strand, within HP15_52at 58.056 kb on - strandat 58.067 kb on - strandat 58.091 kb on + strandat 58.199 kb on + strandat 58.199 kb on - strandat 58.225 kb on - strandat 58.236 kb on + strandat 58.317 kb on + strandat 58.333 kb on - strandat 58.350 kb on - strandat 58.385 kb on - strandat 58.412 kb on - strand, within HP15_53at 58.468 kb on + strand, within HP15_53at 58.474 kb on + strand, within HP15_53at 58.497 kb on - strand, within HP15_53at 58.548 kb on - strand, within HP15_53at 58.576 kb on - strand, within HP15_53at 58.685 kb on - strand, within HP15_53at 58.717 kb on - strand, within HP15_53at 58.745 kb on + strand, within HP15_53at 58.793 kb on + strand, within HP15_53at 58.804 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 59.001 kb on + strand, within HP15_53at 59.022 kb on - strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.088 kb on - strand, within HP15_53at 59.158 kb on + strand, within HP15_53at 59.166 kb on - strand, within HP15_53

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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56,056 - HP15_51 0.66 -0.9
56,056 - HP15_51 0.66 -0.5
56,084 + HP15_51 0.68 +1.4
56,084 + HP15_51 0.68 +0.7
56,092 - HP15_51 0.69 +0.8
56,163 + HP15_51 0.75 -0.1
56,171 - HP15_51 0.75 -0.1
56,171 - HP15_51 0.75 -0.4
56,185 + HP15_51 0.76 -0.2
56,185 + HP15_51 0.76 +0.3
56,185 + HP15_51 0.76 -0.4
56,185 + HP15_51 0.76 -0.2
56,306 - HP15_51 0.86 +1.0
56,306 - HP15_51 0.86 +1.6
56,379 + +0.2
56,379 + -1.0
56,379 + +0.4
56,379 + -0.3
56,387 - +1.2
56,387 - +0.7
56,387 - +0.7
56,414 + +0.2
56,421 - -0.9
56,440 - -0.2
56,445 + +0.7
56,453 - +1.2
56,454 + -0.7
56,455 - +0.1
56,557 + +0.0
56,663 + -0.4
56,681 - +1.2
56,698 + +0.3
56,706 - +0.3
56,712 + -0.3
56,732 - +0.4
56,936 - +0.7
56,944 - -1.0
56,961 + -0.3
57,022 + HP15_52 0.11 +0.2
57,063 - HP15_52 0.14 +0.7
57,074 - HP15_52 0.15 -0.2
57,084 - HP15_52 0.16 -0.8
57,184 + HP15_52 0.24 +0.2
57,299 - HP15_52 0.32 -0.6
57,351 - HP15_52 0.36 -0.6
57,383 + HP15_52 0.39 -0.1
57,476 + HP15_52 0.46 -0.3
57,486 + HP15_52 0.47 +0.2
57,539 + HP15_52 0.51 -0.3
57,547 - HP15_52 0.51 +0.2
57,575 - HP15_52 0.54 -0.1
57,668 + HP15_52 0.61 -0.0
57,671 + HP15_52 0.61 -0.3
57,697 - HP15_52 0.63 -0.0
57,730 + HP15_52 0.65 -0.2
57,732 - HP15_52 0.66 -0.1
57,738 - HP15_52 0.66 +0.1
57,738 - HP15_52 0.66 -0.4
57,866 - HP15_52 0.76 -1.3
57,913 + HP15_52 0.79 +0.1
57,922 - HP15_52 0.80 +0.3
57,924 + HP15_52 0.80 -0.6
57,932 - HP15_52 0.81 -0.2
57,932 - HP15_52 0.81 -0.0
57,932 - HP15_52 0.81 +0.4
57,932 - HP15_52 0.81 -0.7
57,948 + HP15_52 0.82 -0.2
57,966 + HP15_52 0.83 +0.6
57,966 + HP15_52 0.83 +0.8
57,966 + HP15_52 0.83 -2.2
57,966 + HP15_52 0.83 -0.8
57,966 + HP15_52 0.83 -0.1
57,989 + HP15_52 0.85 +0.0
57,995 - HP15_52 0.86 -0.6
57,997 - HP15_52 0.86 -0.5
58,037 - HP15_52 0.89 +0.4
58,056 - +0.9
58,067 - +0.4
58,091 + +0.1
58,199 + +0.9
58,199 - -0.1
58,225 - -0.1
58,236 + +0.3
58,317 + +0.3
58,333 - -0.8
58,350 - +0.6
58,385 - -0.6
58,412 - HP15_53 0.10 -1.8
58,468 + HP15_53 0.15 +0.3
58,474 + HP15_53 0.16 +0.1
58,497 - HP15_53 0.18 +0.2
58,548 - HP15_53 0.22 -0.4
58,576 - HP15_53 0.25 -0.3
58,685 - HP15_53 0.34 +1.0
58,717 - HP15_53 0.37 -0.5
58,745 + HP15_53 0.39 +0.7
58,793 + HP15_53 0.43 -0.3
58,804 + HP15_53 0.44 +1.2
58,819 + HP15_53 0.46 +0.8
58,819 + HP15_53 0.46 -0.5
58,819 + HP15_53 0.46 -0.6
58,932 - HP15_53 0.56 -0.0
58,932 - HP15_53 0.56 -0.3
58,932 - HP15_53 0.56 +0.3
59,001 + HP15_53 0.62 +0.6
59,022 - HP15_53 0.63 +0.6
59,080 + HP15_53 0.68 -0.6
59,080 + HP15_53 0.68 +0.4
59,080 + HP15_53 0.68 +0.1
59,080 + HP15_53 0.68 -0.1
59,080 + HP15_53 0.68 +0.5
59,088 - HP15_53 0.69 +0.2
59,158 + HP15_53 0.75 +0.2
59,166 - HP15_53 0.76 -0.2

Or see this region's nucleotide sequence