Strain Fitness in Marinobacter adhaerens HP15 around HP15_3827

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3825 and HP15_3826 are separated by 37 nucleotidesHP15_3826 and HP15_3827 are separated by 39 nucleotidesHP15_3827 and HP15_3828 are separated by 206 nucleotidesHP15_3828 and HP15_3829 are separated by 107 nucleotides HP15_3825: HP15_3825 - NfeD family protein, at 4,051,422 to 4,052,891 _3825 HP15_3826: HP15_3826 - Band 7 protein, at 4,052,929 to 4,053,732 _3826 HP15_3827: HP15_3827 - secreted protein, at 4,053,772 to 4,054,053 _3827 HP15_3828: HP15_3828 - ErfK/YbiS/YcfS/YnhG family protein, at 4,054,260 to 4,054,823 _3828 HP15_3829: HP15_3829 - sodium/hydrogen exchanger, at 4,054,931 to 4,056,655 _3829 Position (kb) 4053 4054 4055Strain fitness (log2 ratio) -1 0 1at 4053.067 kb on + strand, within HP15_3826at 4053.070 kb on - strand, within HP15_3826at 4053.115 kb on - strand, within HP15_3826at 4053.467 kb on - strand, within HP15_3826at 4053.586 kb on + strand, within HP15_3826at 4053.853 kb on + strand, within HP15_3827at 4053.874 kb on + strand, within HP15_3827at 4054.006 kb on + strand, within HP15_3827at 4054.023 kb on + strand, within HP15_3827at 4054.031 kb on - strandat 4054.051 kb on - strandat 4054.096 kb on + strandat 4054.170 kb on + strandat 4054.170 kb on + strandat 4054.273 kb on - strandat 4054.351 kb on - strand, within HP15_3828at 4054.362 kb on + strand, within HP15_3828at 4054.363 kb on + strand, within HP15_3828at 4054.368 kb on + strand, within HP15_3828at 4054.390 kb on + strand, within HP15_3828at 4054.427 kb on + strand, within HP15_3828at 4054.480 kb on - strand, within HP15_3828at 4054.528 kb on - strand, within HP15_3828at 4054.568 kb on + strand, within HP15_3828at 4054.645 kb on - strand, within HP15_3828at 4054.647 kb on + strand, within HP15_3828at 4054.672 kb on + strand, within HP15_3828at 4054.696 kb on + strand, within HP15_3828at 4054.696 kb on + strand, within HP15_3828at 4054.696 kb on + strand, within HP15_3828at 4054.704 kb on - strand, within HP15_3828at 4054.704 kb on - strand, within HP15_3828at 4054.732 kb on + strand, within HP15_3828at 4054.740 kb on - strand, within HP15_3828at 4054.777 kb on + strandat 4054.782 kb on + strandat 4054.805 kb on - strandat 4054.896 kb on - strandat 4054.978 kb on + strandat 4054.986 kb on - strandat 4055.014 kb on + strandat 4055.014 kb on + strandat 4055.020 kb on + strandat 4055.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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4,053,067 + HP15_3826 0.17 -0.7
4,053,070 - HP15_3826 0.18 -0.5
4,053,115 - HP15_3826 0.23 -0.7
4,053,467 - HP15_3826 0.67 +0.1
4,053,586 + HP15_3826 0.82 -0.3
4,053,853 + HP15_3827 0.29 -1.2
4,053,874 + HP15_3827 0.36 -0.1
4,054,006 + HP15_3827 0.83 -0.5
4,054,023 + HP15_3827 0.89 -1.5
4,054,031 - -0.6
4,054,051 - -1.2
4,054,096 + -0.2
4,054,170 + -0.6
4,054,170 + +0.1
4,054,273 - +0.6
4,054,351 - HP15_3828 0.16 +0.5
4,054,362 + HP15_3828 0.18 +0.5
4,054,363 + HP15_3828 0.18 +0.4
4,054,368 + HP15_3828 0.19 +0.1
4,054,390 + HP15_3828 0.23 +0.1
4,054,427 + HP15_3828 0.30 +1.1
4,054,480 - HP15_3828 0.39 -0.2
4,054,528 - HP15_3828 0.48 +0.0
4,054,568 + HP15_3828 0.55 -0.1
4,054,645 - HP15_3828 0.68 -1.2
4,054,647 + HP15_3828 0.69 +0.9
4,054,672 + HP15_3828 0.73 +0.4
4,054,696 + HP15_3828 0.77 +0.5
4,054,696 + HP15_3828 0.77 +0.5
4,054,696 + HP15_3828 0.77 +0.3
4,054,704 - HP15_3828 0.79 -0.5
4,054,704 - HP15_3828 0.79 +0.4
4,054,732 + HP15_3828 0.84 -0.2
4,054,740 - HP15_3828 0.85 +0.9
4,054,777 + -0.3
4,054,782 + -0.8
4,054,805 - +0.6
4,054,896 - -0.2
4,054,978 + -0.5
4,054,986 - +0.7
4,055,014 + -0.7
4,055,014 + -0.3
4,055,020 + -0.4
4,055,022 - -0.8

Or see this region's nucleotide sequence