Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3825 and HP15_3826 are separated by 37 nucleotides HP15_3826 and HP15_3827 are separated by 39 nucleotides HP15_3827 and HP15_3828 are separated by 206 nucleotides
HP15_3825: HP15_3825 - NfeD family protein, at 4,051,422 to 4,052,891
_3825
HP15_3826: HP15_3826 - Band 7 protein, at 4,052,929 to 4,053,732
_3826
HP15_3827: HP15_3827 - secreted protein, at 4,053,772 to 4,054,053
_3827
HP15_3828: HP15_3828 - ErfK/YbiS/YcfS/YnhG family protein, at 4,054,260 to 4,054,823
_3828
Position (kb)
4052
4053
4054 Strain fitness (log2 ratio)
-1
0
1 at 4051.966 kb on - strand, within HP15_3825 at 4052.018 kb on - strand, within HP15_3825 at 4052.045 kb on + strand, within HP15_3825 at 4052.160 kb on - strand, within HP15_3825 at 4052.160 kb on - strand, within HP15_3825 at 4052.167 kb on - strand, within HP15_3825 at 4052.213 kb on + strand, within HP15_3825 at 4052.344 kb on + strand, within HP15_3825 at 4052.373 kb on - strand, within HP15_3825 at 4052.434 kb on - strand, within HP15_3825 at 4052.438 kb on + strand, within HP15_3825 at 4052.478 kb on - strand, within HP15_3825 at 4052.515 kb on + strand, within HP15_3825 at 4052.550 kb on + strand, within HP15_3825 at 4052.623 kb on - strand, within HP15_3825 at 4052.708 kb on + strand, within HP15_3825 at 4053.067 kb on + strand, within HP15_3826 at 4053.070 kb on - strand, within HP15_3826 at 4053.115 kb on - strand, within HP15_3826 at 4053.467 kb on - strand, within HP15_3826 at 4053.586 kb on + strand, within HP15_3826 at 4053.853 kb on + strand, within HP15_3827 at 4053.874 kb on + strand, within HP15_3827 at 4054.006 kb on + strand, within HP15_3827 at 4054.023 kb on + strand, within HP15_3827 at 4054.031 kb on - strand at 4054.051 kb on - strand at 4054.096 kb on + strand at 4054.170 kb on + strand at 4054.170 kb on + strand at 4054.273 kb on - strand at 4054.351 kb on - strand, within HP15_3828 at 4054.362 kb on + strand, within HP15_3828 at 4054.363 kb on + strand, within HP15_3828 at 4054.368 kb on + strand, within HP15_3828 at 4054.390 kb on + strand, within HP15_3828 at 4054.427 kb on + strand, within HP15_3828 at 4054.480 kb on - strand, within HP15_3828 at 4054.528 kb on - strand, within HP15_3828 at 4054.568 kb on + strand, within HP15_3828 at 4054.645 kb on - strand, within HP15_3828 at 4054.647 kb on + strand, within HP15_3828 at 4054.672 kb on + strand, within HP15_3828 at 4054.696 kb on + strand, within HP15_3828 at 4054.696 kb on + strand, within HP15_3828 at 4054.696 kb on + strand, within HP15_3828 at 4054.704 kb on - strand, within HP15_3828 at 4054.704 kb on - strand, within HP15_3828 at 4054.732 kb on + strand, within HP15_3828
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 4,051,966 - HP15_3825 0.37 +0.3 4,052,018 - HP15_3825 0.41 +0.2 4,052,045 + HP15_3825 0.42 -0.4 4,052,160 - HP15_3825 0.50 +0.8 4,052,160 - HP15_3825 0.50 +0.1 4,052,167 - HP15_3825 0.51 -0.5 4,052,213 + HP15_3825 0.54 -0.6 4,052,344 + HP15_3825 0.63 +0.5 4,052,373 - HP15_3825 0.65 -0.4 4,052,434 - HP15_3825 0.69 +0.3 4,052,438 + HP15_3825 0.69 +0.8 4,052,478 - HP15_3825 0.72 -0.2 4,052,515 + HP15_3825 0.74 -0.1 4,052,550 + HP15_3825 0.77 -0.6 4,052,623 - HP15_3825 0.82 +0.6 4,052,708 + HP15_3825 0.87 +0.1 4,053,067 + HP15_3826 0.17 -0.7 4,053,070 - HP15_3826 0.18 -0.5 4,053,115 - HP15_3826 0.23 -0.7 4,053,467 - HP15_3826 0.67 +0.1 4,053,586 + HP15_3826 0.82 -0.3 4,053,853 + HP15_3827 0.29 -1.2 4,053,874 + HP15_3827 0.36 -0.1 4,054,006 + HP15_3827 0.83 -0.5 4,054,023 + HP15_3827 0.89 -1.5 4,054,031 - -0.6 4,054,051 - -1.2 4,054,096 + -0.2 4,054,170 + -0.6 4,054,170 + +0.1 4,054,273 - +0.6 4,054,351 - HP15_3828 0.16 +0.5 4,054,362 + HP15_3828 0.18 +0.5 4,054,363 + HP15_3828 0.18 +0.4 4,054,368 + HP15_3828 0.19 +0.1 4,054,390 + HP15_3828 0.23 +0.1 4,054,427 + HP15_3828 0.30 +1.1 4,054,480 - HP15_3828 0.39 -0.2 4,054,528 - HP15_3828 0.48 +0.0 4,054,568 + HP15_3828 0.55 -0.1 4,054,645 - HP15_3828 0.68 -1.2 4,054,647 + HP15_3828 0.69 +0.9 4,054,672 + HP15_3828 0.73 +0.4 4,054,696 + HP15_3828 0.77 +0.5 4,054,696 + HP15_3828 0.77 +0.5 4,054,696 + HP15_3828 0.77 +0.3 4,054,704 - HP15_3828 0.79 -0.5 4,054,704 - HP15_3828 0.79 +0.4 4,054,732 + HP15_3828 0.84 -0.2
Or see this region's nucleotide sequence