Strain Fitness in Marinobacter adhaerens HP15 around HP15_3714

Experiment: L-Isoleucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3713 and HP15_3714 overlap by 4 nucleotidesHP15_3714 and HP15_3715 are separated by 155 nucleotidesHP15_3715 and HP15_3716 are separated by 18 nucleotides HP15_3713: HP15_3713 - exodeoxyribonuclease V, beta subunit, at 3,923,533 to 3,927,237 _3713 HP15_3714: HP15_3714 - exodeoxyribonuclease V, gamma subunit, at 3,927,234 to 3,930,860 _3714 HP15_3715: HP15_3715 - short-chain dehydrogenase/reductase SDR, at 3,931,016 to 3,931,801 _3715 HP15_3716: HP15_3716 - conserved hypothetical protein, at 3,931,820 to 3,932,110 _3716 Position (kb) 3927 3928 3929 3930 3931Strain fitness (log2 ratio) -2 -1 0 1 2at 3927.303 kb on - strandat 3928.082 kb on + strand, within HP15_3714at 3929.055 kb on - strand, within HP15_3714at 3929.131 kb on + strand, within HP15_3714at 3929.961 kb on - strand, within HP15_3714at 3929.961 kb on - strand, within HP15_3714at 3930.349 kb on + strand, within HP15_3714at 3930.811 kb on + strandat 3930.812 kb on - strandat 3930.878 kb on + strandat 3930.883 kb on + strandat 3930.883 kb on + strandat 3930.922 kb on + strandat 3930.932 kb on + strandat 3931.065 kb on + strandat 3931.067 kb on - strandat 3931.087 kb on - strandat 3931.087 kb on - strandat 3931.087 kb on - strandat 3931.091 kb on + strandat 3931.099 kb on - strand, within HP15_3715at 3931.137 kb on + strand, within HP15_3715at 3931.187 kb on - strand, within HP15_3715at 3931.193 kb on - strand, within HP15_3715at 3931.270 kb on - strand, within HP15_3715at 3931.272 kb on + strand, within HP15_3715at 3931.277 kb on + strand, within HP15_3715at 3931.285 kb on - strand, within HP15_3715at 3931.308 kb on + strand, within HP15_3715at 3931.308 kb on + strand, within HP15_3715at 3931.316 kb on - strand, within HP15_3715at 3931.341 kb on - strand, within HP15_3715at 3931.441 kb on + strand, within HP15_3715at 3931.503 kb on - strand, within HP15_3715at 3931.525 kb on + strand, within HP15_3715at 3931.534 kb on - strand, within HP15_3715at 3931.573 kb on + strand, within HP15_3715at 3931.587 kb on - strand, within HP15_3715at 3931.625 kb on + strand, within HP15_3715at 3931.688 kb on - strand, within HP15_3715at 3931.748 kb on + strandat 3931.809 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
remove
3,927,303 - +0.3
3,928,082 + HP15_3714 0.23 -1.4
3,929,055 - HP15_3714 0.50 -0.4
3,929,131 + HP15_3714 0.52 -1.0
3,929,961 - HP15_3714 0.75 +0.5
3,929,961 - HP15_3714 0.75 -1.0
3,930,349 + HP15_3714 0.86 -1.5
3,930,811 + -0.4
3,930,812 - -0.2
3,930,878 + -0.0
3,930,883 + -0.9
3,930,883 + +0.0
3,930,922 + +0.6
3,930,932 + +2.7
3,931,065 + -0.5
3,931,067 - +0.2
3,931,087 - +0.2
3,931,087 - -0.7
3,931,087 - -0.5
3,931,091 + +0.5
3,931,099 - HP15_3715 0.11 +0.8
3,931,137 + HP15_3715 0.15 -0.4
3,931,187 - HP15_3715 0.22 -0.2
3,931,193 - HP15_3715 0.23 -0.1
3,931,270 - HP15_3715 0.32 -0.7
3,931,272 + HP15_3715 0.33 +0.4
3,931,277 + HP15_3715 0.33 +0.2
3,931,285 - HP15_3715 0.34 -0.2
3,931,308 + HP15_3715 0.37 +1.3
3,931,308 + HP15_3715 0.37 +0.2
3,931,316 - HP15_3715 0.38 -0.4
3,931,341 - HP15_3715 0.41 -0.7
3,931,441 + HP15_3715 0.54 -0.1
3,931,503 - HP15_3715 0.62 +1.2
3,931,525 + HP15_3715 0.65 +0.2
3,931,534 - HP15_3715 0.66 -0.0
3,931,573 + HP15_3715 0.71 +0.7
3,931,587 - HP15_3715 0.73 -1.8
3,931,625 + HP15_3715 0.77 -0.3
3,931,688 - HP15_3715 0.85 -0.2
3,931,748 + +0.1
3,931,809 - +0.6

Or see this region's nucleotide sequence