Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3711 and HP15_3712 are separated by 67 nucleotides HP15_3712 and HP15_3713 overlap by 4 nucleotides
HP15_3711: HP15_3711 - sensory box/GGDEF/GAF/EAL domain protein, at 3,919,846 to 3,921,195
_3711
HP15_3712: HP15_3712 - exonuclease V subunit alpha, at 3,921,263 to 3,923,536
_3712
HP15_3713: HP15_3713 - exodeoxyribonuclease V, beta subunit, at 3,923,533 to 3,927,237
_3713
Position (kb)
3921
3922
3923
3924 Strain fitness (log2 ratio)
-2
-1
0
1 at 3920.281 kb on - strand, within HP15_3711 at 3920.351 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.466 kb on - strand, within HP15_3711 at 3920.506 kb on + strand, within HP15_3711 at 3920.543 kb on - strand, within HP15_3711 at 3920.589 kb on + strand, within HP15_3711 at 3920.762 kb on + strand, within HP15_3711 at 3920.762 kb on + strand, within HP15_3711 at 3920.770 kb on - strand, within HP15_3711 at 3920.793 kb on + strand, within HP15_3711 at 3920.975 kb on + strand, within HP15_3711 at 3921.002 kb on - strand, within HP15_3711 at 3921.083 kb on - strand at 3921.204 kb on + strand at 3921.212 kb on - strand at 3921.225 kb on - strand at 3921.401 kb on - strand at 3921.403 kb on + strand at 3921.418 kb on - strand at 3921.457 kb on - strand at 3921.484 kb on + strand at 3921.494 kb on - strand, within HP15_3712 at 3921.501 kb on + strand, within HP15_3712 at 3921.501 kb on + strand, within HP15_3712 at 3921.588 kb on - strand, within HP15_3712 at 3922.013 kb on + strand, within HP15_3712 at 3922.137 kb on + strand, within HP15_3712 at 3922.148 kb on + strand, within HP15_3712 at 3922.182 kb on + strand, within HP15_3712 at 3922.205 kb on - strand, within HP15_3712 at 3922.859 kb on + strand, within HP15_3712 at 3923.176 kb on + strand, within HP15_3712 at 3923.359 kb on - strand at 3923.380 kb on - strand at 3923.469 kb on + strand at 3923.469 kb on + strand at 3923.477 kb on - strand at 3923.477 kb on - strand at 3923.569 kb on - strand at 3923.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 3,920,281 - HP15_3711 0.32 -0.2 3,920,351 + HP15_3711 0.37 +0.1 3,920,458 + HP15_3711 0.45 -0.7 3,920,458 + HP15_3711 0.45 +0.5 3,920,458 + HP15_3711 0.45 +0.7 3,920,458 + HP15_3711 0.45 -1.0 3,920,458 + HP15_3711 0.45 -1.4 3,920,458 + HP15_3711 0.45 +0.5 3,920,458 + HP15_3711 0.45 +0.7 3,920,458 + HP15_3711 0.45 +1.2 3,920,466 - HP15_3711 0.46 +0.2 3,920,506 + HP15_3711 0.49 +1.6 3,920,543 - HP15_3711 0.52 +1.1 3,920,589 + HP15_3711 0.55 +0.2 3,920,762 + HP15_3711 0.68 +1.0 3,920,762 + HP15_3711 0.68 -0.9 3,920,770 - HP15_3711 0.68 +0.5 3,920,793 + HP15_3711 0.70 -0.8 3,920,975 + HP15_3711 0.84 -0.1 3,921,002 - HP15_3711 0.86 -0.6 3,921,083 - -1.0 3,921,204 + -0.2 3,921,212 - +0.0 3,921,225 - +0.7 3,921,401 - -0.4 3,921,403 + -0.9 3,921,418 - -0.6 3,921,457 - +0.2 3,921,484 + -0.7 3,921,494 - HP15_3712 0.10 -0.5 3,921,501 + HP15_3712 0.10 -0.0 3,921,501 + HP15_3712 0.10 -0.4 3,921,588 - HP15_3712 0.14 -1.3 3,922,013 + HP15_3712 0.33 -0.5 3,922,137 + HP15_3712 0.38 -1.5 3,922,148 + HP15_3712 0.39 +0.9 3,922,182 + HP15_3712 0.40 -0.3 3,922,205 - HP15_3712 0.41 -1.6 3,922,859 + HP15_3712 0.70 -0.4 3,923,176 + HP15_3712 0.84 -0.4 3,923,359 - +0.7 3,923,380 - -0.4 3,923,469 + +0.3 3,923,469 + +1.1 3,923,477 - +0.1 3,923,477 - +0.1 3,923,569 - -0.6 3,923,769 + -1.9
Or see this region's nucleotide sequence