Strain Fitness in Marinobacter adhaerens HP15 around HP15_3712

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3711 and HP15_3712 are separated by 67 nucleotidesHP15_3712 and HP15_3713 overlap by 4 nucleotides HP15_3711: HP15_3711 - sensory box/GGDEF/GAF/EAL domain protein, at 3,919,846 to 3,921,195 _3711 HP15_3712: HP15_3712 - exonuclease V subunit alpha, at 3,921,263 to 3,923,536 _3712 HP15_3713: HP15_3713 - exodeoxyribonuclease V, beta subunit, at 3,923,533 to 3,927,237 _3713 Position (kb) 3921 3922 3923 3924Strain fitness (log2 ratio) -2 -1 0 1at 3920.281 kb on - strand, within HP15_3711at 3920.351 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.458 kb on + strand, within HP15_3711at 3920.466 kb on - strand, within HP15_3711at 3920.506 kb on + strand, within HP15_3711at 3920.543 kb on - strand, within HP15_3711at 3920.589 kb on + strand, within HP15_3711at 3920.762 kb on + strand, within HP15_3711at 3920.762 kb on + strand, within HP15_3711at 3920.770 kb on - strand, within HP15_3711at 3920.793 kb on + strand, within HP15_3711at 3920.975 kb on + strand, within HP15_3711at 3921.002 kb on - strand, within HP15_3711at 3921.083 kb on - strandat 3921.204 kb on + strandat 3921.212 kb on - strandat 3921.225 kb on - strandat 3921.401 kb on - strandat 3921.403 kb on + strandat 3921.418 kb on - strandat 3921.457 kb on - strandat 3921.484 kb on + strandat 3921.494 kb on - strand, within HP15_3712at 3921.501 kb on + strand, within HP15_3712at 3921.501 kb on + strand, within HP15_3712at 3921.588 kb on - strand, within HP15_3712at 3922.013 kb on + strand, within HP15_3712at 3922.137 kb on + strand, within HP15_3712at 3922.148 kb on + strand, within HP15_3712at 3922.182 kb on + strand, within HP15_3712at 3922.205 kb on - strand, within HP15_3712at 3922.859 kb on + strand, within HP15_3712at 3923.176 kb on + strand, within HP15_3712at 3923.359 kb on - strandat 3923.380 kb on - strandat 3923.469 kb on + strandat 3923.469 kb on + strandat 3923.477 kb on - strandat 3923.477 kb on - strandat 3923.569 kb on - strandat 3923.769 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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3,920,281 - HP15_3711 0.32 -0.2
3,920,351 + HP15_3711 0.37 +0.1
3,920,458 + HP15_3711 0.45 -0.7
3,920,458 + HP15_3711 0.45 +0.5
3,920,458 + HP15_3711 0.45 +0.7
3,920,458 + HP15_3711 0.45 -1.0
3,920,458 + HP15_3711 0.45 -1.4
3,920,458 + HP15_3711 0.45 +0.5
3,920,458 + HP15_3711 0.45 +0.7
3,920,458 + HP15_3711 0.45 +1.2
3,920,466 - HP15_3711 0.46 +0.2
3,920,506 + HP15_3711 0.49 +1.6
3,920,543 - HP15_3711 0.52 +1.1
3,920,589 + HP15_3711 0.55 +0.2
3,920,762 + HP15_3711 0.68 +1.0
3,920,762 + HP15_3711 0.68 -0.9
3,920,770 - HP15_3711 0.68 +0.5
3,920,793 + HP15_3711 0.70 -0.8
3,920,975 + HP15_3711 0.84 -0.1
3,921,002 - HP15_3711 0.86 -0.6
3,921,083 - -1.0
3,921,204 + -0.2
3,921,212 - +0.0
3,921,225 - +0.7
3,921,401 - -0.4
3,921,403 + -0.9
3,921,418 - -0.6
3,921,457 - +0.2
3,921,484 + -0.7
3,921,494 - HP15_3712 0.10 -0.5
3,921,501 + HP15_3712 0.10 -0.0
3,921,501 + HP15_3712 0.10 -0.4
3,921,588 - HP15_3712 0.14 -1.3
3,922,013 + HP15_3712 0.33 -0.5
3,922,137 + HP15_3712 0.38 -1.5
3,922,148 + HP15_3712 0.39 +0.9
3,922,182 + HP15_3712 0.40 -0.3
3,922,205 - HP15_3712 0.41 -1.6
3,922,859 + HP15_3712 0.70 -0.4
3,923,176 + HP15_3712 0.84 -0.4
3,923,359 - +0.7
3,923,380 - -0.4
3,923,469 + +0.3
3,923,469 + +1.1
3,923,477 - +0.1
3,923,477 - +0.1
3,923,569 - -0.6
3,923,769 + -1.9

Or see this region's nucleotide sequence