Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3566 and HP15_3567 overlap by 15 nucleotides HP15_3567 and HP15_3568 are separated by 291 nucleotides
HP15_3566: HP15_3566 - MATE efflux family protein, at 3,756,557 to 3,757,894
_3566
HP15_3567: HP15_3567 - conserved hypothetical protein, at 3,757,880 to 3,758,305
_3567
HP15_3568: HP15_3568 - beta-lactamase domain protein, at 3,758,597 to 3,760,234
_3568
Position (kb)
3757
3758
3759 Strain fitness (log2 ratio)
-2
-1
0
1 at 3756.981 kb on + strand, within HP15_3566 at 3756.995 kb on - strand, within HP15_3566 at 3757.002 kb on - strand, within HP15_3566 at 3757.055 kb on - strand, within HP15_3566 at 3757.075 kb on - strand, within HP15_3566 at 3757.075 kb on - strand, within HP15_3566 at 3757.087 kb on + strand, within HP15_3566 at 3757.164 kb on + strand, within HP15_3566 at 3757.209 kb on + strand, within HP15_3566 at 3757.217 kb on - strand, within HP15_3566 at 3757.224 kb on + strand, within HP15_3566 at 3757.232 kb on - strand, within HP15_3566 at 3757.250 kb on - strand, within HP15_3566 at 3757.269 kb on + strand, within HP15_3566 at 3757.270 kb on - strand, within HP15_3566 at 3757.367 kb on - strand, within HP15_3566 at 3757.581 kb on + strand, within HP15_3566 at 3757.608 kb on + strand, within HP15_3566 at 3757.649 kb on - strand, within HP15_3566 at 3757.701 kb on + strand, within HP15_3566 at 3757.711 kb on - strand, within HP15_3566 at 3757.765 kb on + strand at 3757.792 kb on - strand at 3757.792 kb on - strand at 3758.047 kb on + strand, within HP15_3567 at 3758.231 kb on - strand, within HP15_3567 at 3758.231 kb on - strand, within HP15_3567 at 3758.300 kb on + strand at 3758.404 kb on + strand at 3758.412 kb on - strand at 3758.427 kb on - strand at 3758.476 kb on - strand at 3758.476 kb on - strand at 3758.594 kb on + strand at 3758.649 kb on + strand at 3758.697 kb on - strand at 3758.799 kb on - strand, within HP15_3568 at 3758.819 kb on + strand, within HP15_3568 at 3758.827 kb on - strand, within HP15_3568 at 3758.827 kb on - strand, within HP15_3568 at 3758.827 kb on - strand, within HP15_3568 at 3758.847 kb on + strand, within HP15_3568 at 3758.855 kb on - strand, within HP15_3568 at 3758.887 kb on + strand, within HP15_3568 at 3758.924 kb on + strand, within HP15_3568 at 3759.007 kb on + strand, within HP15_3568 at 3759.024 kb on + strand, within HP15_3568 at 3759.091 kb on - strand, within HP15_3568 at 3759.138 kb on - strand, within HP15_3568 at 3759.146 kb on + strand, within HP15_3568 at 3759.173 kb on + strand, within HP15_3568 at 3759.181 kb on - strand, within HP15_3568 at 3759.215 kb on - strand, within HP15_3568 at 3759.242 kb on - strand, within HP15_3568
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 3,756,981 + HP15_3566 0.32 +0.7 3,756,995 - HP15_3566 0.33 -0.4 3,757,002 - HP15_3566 0.33 -0.0 3,757,055 - HP15_3566 0.37 +0.8 3,757,075 - HP15_3566 0.39 +0.3 3,757,075 - HP15_3566 0.39 -0.1 3,757,087 + HP15_3566 0.40 -0.4 3,757,164 + HP15_3566 0.45 +0.6 3,757,209 + HP15_3566 0.49 -0.5 3,757,217 - HP15_3566 0.49 +0.7 3,757,224 + HP15_3566 0.50 -0.4 3,757,232 - HP15_3566 0.50 +0.8 3,757,250 - HP15_3566 0.52 +1.5 3,757,269 + HP15_3566 0.53 -1.1 3,757,270 - HP15_3566 0.53 -0.6 3,757,367 - HP15_3566 0.61 -0.0 3,757,581 + HP15_3566 0.77 -0.1 3,757,608 + HP15_3566 0.79 +0.4 3,757,649 - HP15_3566 0.82 +0.7 3,757,701 + HP15_3566 0.86 +0.6 3,757,711 - HP15_3566 0.86 +0.6 3,757,765 + +0.4 3,757,792 - +0.7 3,757,792 - -0.5 3,758,047 + HP15_3567 0.39 -1.3 3,758,231 - HP15_3567 0.82 +0.0 3,758,231 - HP15_3567 0.82 -2.1 3,758,300 + -0.0 3,758,404 + +0.4 3,758,412 - +0.4 3,758,427 - -2.7 3,758,476 - +0.9 3,758,476 - -0.3 3,758,594 + -1.2 3,758,649 + -0.2 3,758,697 - -0.3 3,758,799 - HP15_3568 0.12 +0.7 3,758,819 + HP15_3568 0.14 +1.4 3,758,827 - HP15_3568 0.14 +0.4 3,758,827 - HP15_3568 0.14 +1.1 3,758,827 - HP15_3568 0.14 +0.6 3,758,847 + HP15_3568 0.15 +0.0 3,758,855 - HP15_3568 0.16 +0.2 3,758,887 + HP15_3568 0.18 -0.2 3,758,924 + HP15_3568 0.20 -1.2 3,759,007 + HP15_3568 0.25 +0.1 3,759,024 + HP15_3568 0.26 -1.5 3,759,091 - HP15_3568 0.30 -1.5 3,759,138 - HP15_3568 0.33 +0.1 3,759,146 + HP15_3568 0.34 -0.4 3,759,173 + HP15_3568 0.35 +0.1 3,759,181 - HP15_3568 0.36 +0.9 3,759,215 - HP15_3568 0.38 -0.2 3,759,242 - HP15_3568 0.39 -0.3
Or see this region's nucleotide sequence