Strain Fitness in Marinobacter adhaerens HP15 around HP15_3194

Experiment: L-Isoleucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3193 and HP15_3194 are separated by 27 nucleotidesHP15_3194 and HP15_3195 are separated by 12 nucleotidesHP15_3195 and HP15_3196 are separated by 88 nucleotidesHP15_3196 and HP15_3197 are separated by 11 nucleotides HP15_3193: HP15_3193 - ubiquinone biosynthesis protein UbiB, at 3,347,770 to 3,349,413 _3193 HP15_3194: HP15_3194 - phosphoribosyl-AMP cyclohydrolase, at 3,349,441 to 3,349,857 _3194 HP15_3195: HP15_3195 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data), at 3,349,870 to 3,350,199 _3195 HP15_3196: HP15_3196 - twin-arginine translocation protein TatA/E, at 3,350,288 to 3,350,527 _3196 HP15_3197: HP15_3197 - twin-arginine translocation subgoup, at 3,350,539 to 3,351,012 _3197 Position (kb) 3349 3350Strain fitness (log2 ratio) -3 -2 -1 0 1at 3349.525 kb on + strand, within HP15_3194at 3349.609 kb on + strand, within HP15_3194at 3349.658 kb on + strand, within HP15_3194at 3349.830 kb on + strandat 3349.840 kb on + strandat 3349.851 kb on + strandat 3349.934 kb on + strand, within HP15_3195at 3349.964 kb on - strand, within HP15_3195at 3350.056 kb on - strand, within HP15_3195at 3350.201 kb on + strandat 3350.523 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
remove
3,349,525 + HP15_3194 0.20 -3.7
3,349,609 + HP15_3194 0.40 -2.0
3,349,658 + HP15_3194 0.52 -0.9
3,349,830 + +0.6
3,349,840 + -0.1
3,349,851 + +0.8
3,349,934 + HP15_3195 0.19 -0.3
3,349,964 - HP15_3195 0.28 -0.0
3,350,056 - HP15_3195 0.56 -0.1
3,350,201 + -0.6
3,350,523 + -0.6

Or see this region's nucleotide sequence