Strain Fitness in Marinobacter adhaerens HP15 around HP15_3133

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3132 and HP15_3133 are separated by 67 nucleotidesHP15_3133 and HP15_3134 are separated by 84 nucleotides HP15_3132: HP15_3132 - fumarate hydratase class II, at 3,284,016 to 3,285,392 _3132 HP15_3133: HP15_3133 - conserved hypothetical protein, at 3,285,460 to 3,285,744 _3133 HP15_3134: HP15_3134 - two-component system sensor protein, at 3,285,829 to 3,287,595 _3134 Position (kb) 3285 3286Strain fitness (log2 ratio) -2 -1 0 1 2at 3284.487 kb on + strand, within HP15_3132at 3284.542 kb on + strand, within HP15_3132at 3284.589 kb on - strand, within HP15_3132at 3284.653 kb on + strand, within HP15_3132at 3284.653 kb on + strand, within HP15_3132at 3284.661 kb on - strand, within HP15_3132at 3284.661 kb on - strand, within HP15_3132at 3284.720 kb on + strand, within HP15_3132at 3284.725 kb on + strand, within HP15_3132at 3284.738 kb on - strand, within HP15_3132at 3284.793 kb on - strand, within HP15_3132at 3284.827 kb on - strand, within HP15_3132at 3284.852 kb on + strand, within HP15_3132at 3284.916 kb on - strand, within HP15_3132at 3285.032 kb on + strand, within HP15_3132at 3285.039 kb on - strand, within HP15_3132at 3285.153 kb on - strand, within HP15_3132at 3285.153 kb on - strand, within HP15_3132at 3285.153 kb on - strand, within HP15_3132at 3285.166 kb on + strand, within HP15_3132at 3285.217 kb on - strand, within HP15_3132at 3285.222 kb on - strand, within HP15_3132at 3285.245 kb on + strand, within HP15_3132at 3285.266 kb on + strandat 3285.279 kb on - strandat 3285.279 kb on - strandat 3285.322 kb on - strandat 3285.333 kb on - strandat 3285.471 kb on + strandat 3285.503 kb on + strand, within HP15_3133at 3285.511 kb on - strand, within HP15_3133at 3285.521 kb on - strand, within HP15_3133at 3285.585 kb on + strand, within HP15_3133at 3285.593 kb on - strand, within HP15_3133at 3285.700 kb on - strand, within HP15_3133at 3285.746 kb on - strandat 3285.754 kb on - strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.794 kb on + strandat 3285.837 kb on + strandat 3285.837 kb on + strandat 3285.874 kb on - strandat 3285.927 kb on + strandat 3285.927 kb on + strandat 3285.995 kb on - strandat 3286.054 kb on + strand, within HP15_3134at 3286.054 kb on + strand, within HP15_3134at 3286.054 kb on + strand, within HP15_3134at 3286.125 kb on + strand, within HP15_3134at 3286.133 kb on - strand, within HP15_3134at 3286.251 kb on + strand, within HP15_3134at 3286.254 kb on - strand, within HP15_3134at 3286.261 kb on + strand, within HP15_3134at 3286.442 kb on + strand, within HP15_3134at 3286.564 kb on - strand, within HP15_3134at 3286.580 kb on + strand, within HP15_3134at 3286.586 kb on - strand, within HP15_3134at 3286.594 kb on + strand, within HP15_3134at 3286.599 kb on + strand, within HP15_3134at 3286.602 kb on - strand, within HP15_3134at 3286.604 kb on + strand, within HP15_3134at 3286.685 kb on + strand, within HP15_3134at 3286.690 kb on + strand, within HP15_3134at 3286.693 kb on - strand, within HP15_3134

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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3,284,487 + HP15_3132 0.34 -0.2
3,284,542 + HP15_3132 0.38 +0.9
3,284,589 - HP15_3132 0.42 +0.8
3,284,653 + HP15_3132 0.46 +0.3
3,284,653 + HP15_3132 0.46 +0.2
3,284,661 - HP15_3132 0.47 -0.0
3,284,661 - HP15_3132 0.47 +0.3
3,284,720 + HP15_3132 0.51 +1.0
3,284,725 + HP15_3132 0.51 -0.4
3,284,738 - HP15_3132 0.52 -0.5
3,284,793 - HP15_3132 0.56 -0.7
3,284,827 - HP15_3132 0.59 -0.5
3,284,852 + HP15_3132 0.61 -0.3
3,284,916 - HP15_3132 0.65 +0.3
3,285,032 + HP15_3132 0.74 +0.0
3,285,039 - HP15_3132 0.74 +0.2
3,285,153 - HP15_3132 0.83 -0.6
3,285,153 - HP15_3132 0.83 -0.5
3,285,153 - HP15_3132 0.83 +0.5
3,285,166 + HP15_3132 0.84 +0.3
3,285,217 - HP15_3132 0.87 -0.4
3,285,222 - HP15_3132 0.88 +1.4
3,285,245 + HP15_3132 0.89 +0.4
3,285,266 + +0.1
3,285,279 - +0.1
3,285,279 - +0.8
3,285,322 - -0.4
3,285,333 - +0.5
3,285,471 + +0.5
3,285,503 + HP15_3133 0.15 -2.6
3,285,511 - HP15_3133 0.18 +0.4
3,285,521 - HP15_3133 0.21 -0.2
3,285,585 + HP15_3133 0.44 +0.1
3,285,593 - HP15_3133 0.47 -0.7
3,285,700 - HP15_3133 0.84 -1.1
3,285,746 - +0.3
3,285,754 - -1.2
3,285,776 + +0.2
3,285,776 + +0.1
3,285,776 + +1.1
3,285,776 + +1.2
3,285,776 + -0.1
3,285,776 + +0.1
3,285,776 + -0.6
3,285,784 - -0.5
3,285,784 - +0.2
3,285,784 - +0.4
3,285,784 - +0.4
3,285,784 - +0.1
3,285,794 + +0.1
3,285,837 + +0.7
3,285,837 + +0.3
3,285,874 - +2.7
3,285,927 + -1.4
3,285,927 + -0.1
3,285,995 - -0.2
3,286,054 + HP15_3134 0.13 +0.2
3,286,054 + HP15_3134 0.13 +0.5
3,286,054 + HP15_3134 0.13 -0.6
3,286,125 + HP15_3134 0.17 +1.1
3,286,133 - HP15_3134 0.17 -0.4
3,286,251 + HP15_3134 0.24 -0.1
3,286,254 - HP15_3134 0.24 -0.1
3,286,261 + HP15_3134 0.24 +1.0
3,286,442 + HP15_3134 0.35 +1.2
3,286,564 - HP15_3134 0.42 -0.6
3,286,580 + HP15_3134 0.43 +0.5
3,286,586 - HP15_3134 0.43 -1.1
3,286,594 + HP15_3134 0.43 -0.4
3,286,599 + HP15_3134 0.44 +0.5
3,286,602 - HP15_3134 0.44 +0.2
3,286,604 + HP15_3134 0.44 -0.3
3,286,685 + HP15_3134 0.48 +0.6
3,286,690 + HP15_3134 0.49 +1.1
3,286,693 - HP15_3134 0.49 +0.3

Or see this region's nucleotide sequence