Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3132 and HP15_3133 are separated by 67 nucleotides HP15_3133 and HP15_3134 are separated by 84 nucleotides
HP15_3132: HP15_3132 - fumarate hydratase class II, at 3,284,016 to 3,285,392
_3132
HP15_3133: HP15_3133 - conserved hypothetical protein, at 3,285,460 to 3,285,744
_3133
HP15_3134: HP15_3134 - two-component system sensor protein, at 3,285,829 to 3,287,595
_3134
Position (kb)
3285
3286 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3284.487 kb on + strand, within HP15_3132 at 3284.542 kb on + strand, within HP15_3132 at 3284.589 kb on - strand, within HP15_3132 at 3284.653 kb on + strand, within HP15_3132 at 3284.653 kb on + strand, within HP15_3132 at 3284.661 kb on - strand, within HP15_3132 at 3284.661 kb on - strand, within HP15_3132 at 3284.720 kb on + strand, within HP15_3132 at 3284.725 kb on + strand, within HP15_3132 at 3284.738 kb on - strand, within HP15_3132 at 3284.793 kb on - strand, within HP15_3132 at 3284.827 kb on - strand, within HP15_3132 at 3284.852 kb on + strand, within HP15_3132 at 3284.916 kb on - strand, within HP15_3132 at 3285.032 kb on + strand, within HP15_3132 at 3285.039 kb on - strand, within HP15_3132 at 3285.153 kb on - strand, within HP15_3132 at 3285.153 kb on - strand, within HP15_3132 at 3285.153 kb on - strand, within HP15_3132 at 3285.166 kb on + strand, within HP15_3132 at 3285.217 kb on - strand, within HP15_3132 at 3285.222 kb on - strand, within HP15_3132 at 3285.245 kb on + strand, within HP15_3132 at 3285.266 kb on + strand at 3285.279 kb on - strand at 3285.279 kb on - strand at 3285.322 kb on - strand at 3285.333 kb on - strand at 3285.471 kb on + strand at 3285.503 kb on + strand, within HP15_3133 at 3285.511 kb on - strand, within HP15_3133 at 3285.521 kb on - strand, within HP15_3133 at 3285.585 kb on + strand, within HP15_3133 at 3285.593 kb on - strand, within HP15_3133 at 3285.700 kb on - strand, within HP15_3133 at 3285.746 kb on - strand at 3285.754 kb on - strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.794 kb on + strand at 3285.837 kb on + strand at 3285.837 kb on + strand at 3285.874 kb on - strand at 3285.927 kb on + strand at 3285.927 kb on + strand at 3285.995 kb on - strand at 3286.054 kb on + strand, within HP15_3134 at 3286.054 kb on + strand, within HP15_3134 at 3286.054 kb on + strand, within HP15_3134 at 3286.125 kb on + strand, within HP15_3134 at 3286.133 kb on - strand, within HP15_3134 at 3286.251 kb on + strand, within HP15_3134 at 3286.254 kb on - strand, within HP15_3134 at 3286.261 kb on + strand, within HP15_3134 at 3286.442 kb on + strand, within HP15_3134 at 3286.564 kb on - strand, within HP15_3134 at 3286.580 kb on + strand, within HP15_3134 at 3286.586 kb on - strand, within HP15_3134 at 3286.594 kb on + strand, within HP15_3134 at 3286.599 kb on + strand, within HP15_3134 at 3286.602 kb on - strand, within HP15_3134 at 3286.604 kb on + strand, within HP15_3134 at 3286.685 kb on + strand, within HP15_3134 at 3286.690 kb on + strand, within HP15_3134 at 3286.693 kb on - strand, within HP15_3134
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 3,284,487 + HP15_3132 0.34 -0.2 3,284,542 + HP15_3132 0.38 +0.9 3,284,589 - HP15_3132 0.42 +0.8 3,284,653 + HP15_3132 0.46 +0.3 3,284,653 + HP15_3132 0.46 +0.2 3,284,661 - HP15_3132 0.47 -0.0 3,284,661 - HP15_3132 0.47 +0.3 3,284,720 + HP15_3132 0.51 +1.0 3,284,725 + HP15_3132 0.51 -0.4 3,284,738 - HP15_3132 0.52 -0.5 3,284,793 - HP15_3132 0.56 -0.7 3,284,827 - HP15_3132 0.59 -0.5 3,284,852 + HP15_3132 0.61 -0.3 3,284,916 - HP15_3132 0.65 +0.3 3,285,032 + HP15_3132 0.74 +0.0 3,285,039 - HP15_3132 0.74 +0.2 3,285,153 - HP15_3132 0.83 -0.6 3,285,153 - HP15_3132 0.83 -0.5 3,285,153 - HP15_3132 0.83 +0.5 3,285,166 + HP15_3132 0.84 +0.3 3,285,217 - HP15_3132 0.87 -0.4 3,285,222 - HP15_3132 0.88 +1.4 3,285,245 + HP15_3132 0.89 +0.4 3,285,266 + +0.1 3,285,279 - +0.1 3,285,279 - +0.8 3,285,322 - -0.4 3,285,333 - +0.5 3,285,471 + +0.5 3,285,503 + HP15_3133 0.15 -2.6 3,285,511 - HP15_3133 0.18 +0.4 3,285,521 - HP15_3133 0.21 -0.2 3,285,585 + HP15_3133 0.44 +0.1 3,285,593 - HP15_3133 0.47 -0.7 3,285,700 - HP15_3133 0.84 -1.1 3,285,746 - +0.3 3,285,754 - -1.2 3,285,776 + +0.2 3,285,776 + +0.1 3,285,776 + +1.1 3,285,776 + +1.2 3,285,776 + -0.1 3,285,776 + +0.1 3,285,776 + -0.6 3,285,784 - -0.5 3,285,784 - +0.2 3,285,784 - +0.4 3,285,784 - +0.4 3,285,784 - +0.1 3,285,794 + +0.1 3,285,837 + +0.7 3,285,837 + +0.3 3,285,874 - +2.7 3,285,927 + -1.4 3,285,927 + -0.1 3,285,995 - -0.2 3,286,054 + HP15_3134 0.13 +0.2 3,286,054 + HP15_3134 0.13 +0.5 3,286,054 + HP15_3134 0.13 -0.6 3,286,125 + HP15_3134 0.17 +1.1 3,286,133 - HP15_3134 0.17 -0.4 3,286,251 + HP15_3134 0.24 -0.1 3,286,254 - HP15_3134 0.24 -0.1 3,286,261 + HP15_3134 0.24 +1.0 3,286,442 + HP15_3134 0.35 +1.2 3,286,564 - HP15_3134 0.42 -0.6 3,286,580 + HP15_3134 0.43 +0.5 3,286,586 - HP15_3134 0.43 -1.1 3,286,594 + HP15_3134 0.43 -0.4 3,286,599 + HP15_3134 0.44 +0.5 3,286,602 - HP15_3134 0.44 +0.2 3,286,604 + HP15_3134 0.44 -0.3 3,286,685 + HP15_3134 0.48 +0.6 3,286,690 + HP15_3134 0.49 +1.1 3,286,693 - HP15_3134 0.49 +0.3
Or see this region's nucleotide sequence