Strain Fitness in Marinobacter adhaerens HP15 around HP15_2975

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2973 and HP15_2974 are separated by 166 nucleotidesHP15_2974 and HP15_2975 are separated by 59 nucleotidesHP15_2975 and HP15_2976 are separated by 24 nucleotides HP15_2973: HP15_2973 - flavoprotein wrbA, at 3,117,128 to 3,117,727 _2973 HP15_2974: HP15_2974 - channel protein, hemolysin III family, at 3,117,894 to 3,118,595 _2974 HP15_2975: HP15_2975 - protein belonging to uncharacterized protein family UPF0310, at 3,118,655 to 3,119,113 _2975 HP15_2976: HP15_2976 - conserved hypothetical protein, membrane, at 3,119,138 to 3,120,490 _2976 Position (kb) 3118 3119 3120Strain fitness (log2 ratio) -2 -1 0 1 2at 3117.668 kb on - strandat 3117.728 kb on + strandat 3117.775 kb on + strandat 3117.858 kb on + strandat 3117.947 kb on - strandat 3118.061 kb on + strand, within HP15_2974at 3118.069 kb on - strand, within HP15_2974at 3118.112 kb on + strand, within HP15_2974at 3118.120 kb on - strand, within HP15_2974at 3118.135 kb on - strand, within HP15_2974at 3118.139 kb on + strand, within HP15_2974at 3118.169 kb on - strand, within HP15_2974at 3118.319 kb on - strand, within HP15_2974at 3118.458 kb on + strand, within HP15_2974at 3118.500 kb on + strand, within HP15_2974at 3118.500 kb on + strand, within HP15_2974at 3118.500 kb on + strand, within HP15_2974at 3118.500 kb on + strand, within HP15_2974at 3118.500 kb on + strand, within HP15_2974at 3118.500 kb on + strand, within HP15_2974at 3118.501 kb on - strand, within HP15_2974at 3118.508 kb on - strand, within HP15_2974at 3118.508 kb on - strand, within HP15_2974at 3118.565 kb on + strandat 3118.565 kb on + strandat 3118.621 kb on + strandat 3118.752 kb on + strand, within HP15_2975at 3118.806 kb on - strand, within HP15_2975at 3118.989 kb on + strand, within HP15_2975at 3119.046 kb on - strand, within HP15_2975at 3119.061 kb on - strand, within HP15_2975at 3119.094 kb on + strandat 3119.215 kb on + strandat 3119.227 kb on + strandat 3119.237 kb on + strandat 3119.250 kb on - strandat 3119.255 kb on - strandat 3119.260 kb on - strandat 3119.329 kb on + strand, within HP15_2976at 3119.337 kb on - strand, within HP15_2976at 3119.360 kb on - strand, within HP15_2976at 3119.429 kb on + strand, within HP15_2976at 3119.437 kb on - strand, within HP15_2976at 3119.437 kb on - strand, within HP15_2976at 3119.444 kb on - strand, within HP15_2976at 3119.450 kb on + strand, within HP15_2976at 3119.478 kb on - strand, within HP15_2976at 3119.504 kb on + strand, within HP15_2976at 3119.512 kb on - strand, within HP15_2976at 3119.581 kb on - strand, within HP15_2976at 3119.623 kb on + strand, within HP15_2976at 3119.735 kb on + strand, within HP15_2976at 3119.784 kb on - strand, within HP15_2976at 3119.824 kb on + strand, within HP15_2976at 3119.837 kb on - strand, within HP15_2976at 3119.867 kb on + strand, within HP15_2976at 3119.905 kb on + strand, within HP15_2976at 3119.905 kb on + strand, within HP15_2976at 3119.905 kb on + strand, within HP15_2976at 3119.957 kb on + strandat 3119.957 kb on + strand, within HP15_2976at 3119.957 kb on + strand, within HP15_2976at 3119.965 kb on - strand, within HP15_2976at 3119.965 kb on - strand, within HP15_2976at 3119.965 kb on - strand, within HP15_2976at 3119.970 kb on + strand, within HP15_2976at 3120.026 kb on - strand, within HP15_2976at 3120.026 kb on - strand, within HP15_2976

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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3,117,668 - +0.9
3,117,728 + +0.9
3,117,775 + +1.0
3,117,858 + +0.8
3,117,947 - +0.3
3,118,061 + HP15_2974 0.24 -0.6
3,118,069 - HP15_2974 0.25 -0.1
3,118,112 + HP15_2974 0.31 +0.4
3,118,120 - HP15_2974 0.32 -0.1
3,118,135 - HP15_2974 0.34 +0.2
3,118,139 + HP15_2974 0.35 +0.6
3,118,169 - HP15_2974 0.39 +0.5
3,118,319 - HP15_2974 0.61 +0.9
3,118,458 + HP15_2974 0.80 +0.1
3,118,500 + HP15_2974 0.86 -0.3
3,118,500 + HP15_2974 0.86 -0.8
3,118,500 + HP15_2974 0.86 -0.7
3,118,500 + HP15_2974 0.86 -0.5
3,118,500 + HP15_2974 0.86 +0.5
3,118,500 + HP15_2974 0.86 +0.5
3,118,501 - HP15_2974 0.86 -0.1
3,118,508 - HP15_2974 0.87 +0.0
3,118,508 - HP15_2974 0.87 +0.4
3,118,565 + +0.1
3,118,565 + +0.1
3,118,621 + +0.7
3,118,752 + HP15_2975 0.21 -1.5
3,118,806 - HP15_2975 0.33 -0.5
3,118,989 + HP15_2975 0.73 -0.3
3,119,046 - HP15_2975 0.85 -0.8
3,119,061 - HP15_2975 0.88 -0.2
3,119,094 + -0.7
3,119,215 + -0.4
3,119,227 + -2.2
3,119,237 + -0.4
3,119,250 - +0.3
3,119,255 - -0.2
3,119,260 - +1.0
3,119,329 + HP15_2976 0.14 +0.8
3,119,337 - HP15_2976 0.15 +0.2
3,119,360 - HP15_2976 0.16 +0.2
3,119,429 + HP15_2976 0.22 +0.6
3,119,437 - HP15_2976 0.22 +0.8
3,119,437 - HP15_2976 0.22 -0.1
3,119,444 - HP15_2976 0.23 -0.5
3,119,450 + HP15_2976 0.23 +0.6
3,119,478 - HP15_2976 0.25 +1.7
3,119,504 + HP15_2976 0.27 +0.6
3,119,512 - HP15_2976 0.28 -1.7
3,119,581 - HP15_2976 0.33 +0.8
3,119,623 + HP15_2976 0.36 -0.2
3,119,735 + HP15_2976 0.44 -0.6
3,119,784 - HP15_2976 0.48 +0.8
3,119,824 + HP15_2976 0.51 +0.2
3,119,837 - HP15_2976 0.52 -2.2
3,119,867 + HP15_2976 0.54 +2.5
3,119,905 + HP15_2976 0.57 -0.5
3,119,905 + HP15_2976 0.57 -1.4
3,119,905 + HP15_2976 0.57 +0.4
3,119,957 + +0.6
3,119,957 + HP15_2976 0.61 -0.9
3,119,957 + HP15_2976 0.61 +0.0
3,119,965 - HP15_2976 0.61 +1.9
3,119,965 - HP15_2976 0.61 -0.4
3,119,965 - HP15_2976 0.61 -0.3
3,119,970 + HP15_2976 0.61 +0.9
3,120,026 - HP15_2976 0.66 -0.1
3,120,026 - HP15_2976 0.66 +0.5

Or see this region's nucleotide sequence