Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2973 and HP15_2974 are separated by 166 nucleotides HP15_2974 and HP15_2975 are separated by 59 nucleotides HP15_2975 and HP15_2976 are separated by 24 nucleotides
HP15_2973: HP15_2973 - flavoprotein wrbA, at 3,117,128 to 3,117,727
_2973
HP15_2974: HP15_2974 - channel protein, hemolysin III family, at 3,117,894 to 3,118,595
_2974
HP15_2975: HP15_2975 - protein belonging to uncharacterized protein family UPF0310, at 3,118,655 to 3,119,113
_2975
HP15_2976: HP15_2976 - conserved hypothetical protein, membrane, at 3,119,138 to 3,120,490
_2976
Position (kb)
3118
3119
3120 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3117.668 kb on - strand at 3117.728 kb on + strand at 3117.775 kb on + strand at 3117.858 kb on + strand at 3117.947 kb on - strand at 3118.061 kb on + strand, within HP15_2974 at 3118.069 kb on - strand, within HP15_2974 at 3118.112 kb on + strand, within HP15_2974 at 3118.120 kb on - strand, within HP15_2974 at 3118.135 kb on - strand, within HP15_2974 at 3118.139 kb on + strand, within HP15_2974 at 3118.169 kb on - strand, within HP15_2974 at 3118.319 kb on - strand, within HP15_2974 at 3118.458 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.501 kb on - strand, within HP15_2974 at 3118.508 kb on - strand, within HP15_2974 at 3118.508 kb on - strand, within HP15_2974 at 3118.565 kb on + strand at 3118.565 kb on + strand at 3118.621 kb on + strand at 3118.752 kb on + strand, within HP15_2975 at 3118.806 kb on - strand, within HP15_2975 at 3118.989 kb on + strand, within HP15_2975 at 3119.046 kb on - strand, within HP15_2975 at 3119.061 kb on - strand, within HP15_2975 at 3119.094 kb on + strand at 3119.215 kb on + strand at 3119.227 kb on + strand at 3119.237 kb on + strand at 3119.250 kb on - strand at 3119.255 kb on - strand at 3119.260 kb on - strand at 3119.329 kb on + strand, within HP15_2976 at 3119.337 kb on - strand, within HP15_2976 at 3119.360 kb on - strand, within HP15_2976 at 3119.429 kb on + strand, within HP15_2976 at 3119.437 kb on - strand, within HP15_2976 at 3119.437 kb on - strand, within HP15_2976 at 3119.444 kb on - strand, within HP15_2976 at 3119.450 kb on + strand, within HP15_2976 at 3119.478 kb on - strand, within HP15_2976 at 3119.504 kb on + strand, within HP15_2976 at 3119.512 kb on - strand, within HP15_2976 at 3119.581 kb on - strand, within HP15_2976 at 3119.623 kb on + strand, within HP15_2976 at 3119.735 kb on + strand, within HP15_2976 at 3119.784 kb on - strand, within HP15_2976 at 3119.824 kb on + strand, within HP15_2976 at 3119.837 kb on - strand, within HP15_2976 at 3119.867 kb on + strand, within HP15_2976 at 3119.905 kb on + strand, within HP15_2976 at 3119.905 kb on + strand, within HP15_2976 at 3119.905 kb on + strand, within HP15_2976 at 3119.957 kb on + strand at 3119.957 kb on + strand, within HP15_2976 at 3119.957 kb on + strand, within HP15_2976 at 3119.965 kb on - strand, within HP15_2976 at 3119.965 kb on - strand, within HP15_2976 at 3119.965 kb on - strand, within HP15_2976 at 3119.970 kb on + strand, within HP15_2976 at 3120.026 kb on - strand, within HP15_2976 at 3120.026 kb on - strand, within HP15_2976
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 3,117,668 - +0.9 3,117,728 + +0.9 3,117,775 + +1.0 3,117,858 + +0.8 3,117,947 - +0.3 3,118,061 + HP15_2974 0.24 -0.6 3,118,069 - HP15_2974 0.25 -0.1 3,118,112 + HP15_2974 0.31 +0.4 3,118,120 - HP15_2974 0.32 -0.1 3,118,135 - HP15_2974 0.34 +0.2 3,118,139 + HP15_2974 0.35 +0.6 3,118,169 - HP15_2974 0.39 +0.5 3,118,319 - HP15_2974 0.61 +0.9 3,118,458 + HP15_2974 0.80 +0.1 3,118,500 + HP15_2974 0.86 -0.3 3,118,500 + HP15_2974 0.86 -0.8 3,118,500 + HP15_2974 0.86 -0.7 3,118,500 + HP15_2974 0.86 -0.5 3,118,500 + HP15_2974 0.86 +0.5 3,118,500 + HP15_2974 0.86 +0.5 3,118,501 - HP15_2974 0.86 -0.1 3,118,508 - HP15_2974 0.87 +0.0 3,118,508 - HP15_2974 0.87 +0.4 3,118,565 + +0.1 3,118,565 + +0.1 3,118,621 + +0.7 3,118,752 + HP15_2975 0.21 -1.5 3,118,806 - HP15_2975 0.33 -0.5 3,118,989 + HP15_2975 0.73 -0.3 3,119,046 - HP15_2975 0.85 -0.8 3,119,061 - HP15_2975 0.88 -0.2 3,119,094 + -0.7 3,119,215 + -0.4 3,119,227 + -2.2 3,119,237 + -0.4 3,119,250 - +0.3 3,119,255 - -0.2 3,119,260 - +1.0 3,119,329 + HP15_2976 0.14 +0.8 3,119,337 - HP15_2976 0.15 +0.2 3,119,360 - HP15_2976 0.16 +0.2 3,119,429 + HP15_2976 0.22 +0.6 3,119,437 - HP15_2976 0.22 +0.8 3,119,437 - HP15_2976 0.22 -0.1 3,119,444 - HP15_2976 0.23 -0.5 3,119,450 + HP15_2976 0.23 +0.6 3,119,478 - HP15_2976 0.25 +1.7 3,119,504 + HP15_2976 0.27 +0.6 3,119,512 - HP15_2976 0.28 -1.7 3,119,581 - HP15_2976 0.33 +0.8 3,119,623 + HP15_2976 0.36 -0.2 3,119,735 + HP15_2976 0.44 -0.6 3,119,784 - HP15_2976 0.48 +0.8 3,119,824 + HP15_2976 0.51 +0.2 3,119,837 - HP15_2976 0.52 -2.2 3,119,867 + HP15_2976 0.54 +2.5 3,119,905 + HP15_2976 0.57 -0.5 3,119,905 + HP15_2976 0.57 -1.4 3,119,905 + HP15_2976 0.57 +0.4 3,119,957 + +0.6 3,119,957 + HP15_2976 0.61 -0.9 3,119,957 + HP15_2976 0.61 +0.0 3,119,965 - HP15_2976 0.61 +1.9 3,119,965 - HP15_2976 0.61 -0.4 3,119,965 - HP15_2976 0.61 -0.3 3,119,970 + HP15_2976 0.61 +0.9 3,120,026 - HP15_2976 0.66 -0.1 3,120,026 - HP15_2976 0.66 +0.5
Or see this region's nucleotide sequence