Strain Fitness in Marinobacter adhaerens HP15 around HP15_2777

Experiment: L-Isoleucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2776 and HP15_2777 are separated by 110 nucleotidesHP15_2777 and HP15_2778 are separated by 24 nucleotidesHP15_2778 and HP15_2779 are separated by 40 nucleotides HP15_2776: HP15_2776 - membrane protein containing DUF6, transmembrane, at 2,928,482 to 2,929,384 _2776 HP15_2777: HP15_2777 - penicillin-binding protein 1B, at 2,929,495 to 2,929,707 _2777 HP15_2778: HP15_2778 - transcriptional regulator, at 2,929,732 to 2,930,400 _2778 HP15_2779: HP15_2779 - GTP cyclohydrolase II, at 2,930,441 to 2,930,920 _2779 Position (kb) 2929 2930Strain fitness (log2 ratio) -2 -1 0 1 2at 2928.508 kb on - strandat 2928.567 kb on + strandat 2928.567 kb on + strandat 2928.631 kb on - strand, within HP15_2776at 2928.636 kb on - strand, within HP15_2776at 2928.679 kb on + strand, within HP15_2776at 2928.759 kb on + strand, within HP15_2776at 2928.759 kb on + strand, within HP15_2776at 2928.813 kb on + strand, within HP15_2776at 2928.813 kb on + strand, within HP15_2776at 2928.816 kb on + strand, within HP15_2776at 2928.820 kb on - strand, within HP15_2776at 2928.820 kb on - strand, within HP15_2776at 2928.831 kb on + strand, within HP15_2776at 2928.999 kb on - strand, within HP15_2776at 2929.058 kb on - strand, within HP15_2776at 2929.127 kb on - strand, within HP15_2776at 2929.152 kb on + strand, within HP15_2776at 2929.232 kb on - strand, within HP15_2776at 2929.422 kb on - strandat 2929.422 kb on - strandat 2929.422 kb on - strandat 2929.422 kb on - strandat 2929.477 kb on + strandat 2929.477 kb on + strandat 2929.477 kb on + strandat 2929.485 kb on - strandat 2929.485 kb on - strandat 2929.651 kb on - strand, within HP15_2777at 2929.743 kb on - strandat 2929.799 kb on + strand, within HP15_2778at 2929.871 kb on - strand, within HP15_2778at 2929.886 kb on - strand, within HP15_2778at 2929.903 kb on - strand, within HP15_2778at 2930.088 kb on - strand, within HP15_2778at 2930.115 kb on - strand, within HP15_2778at 2930.202 kb on + strand, within HP15_2778at 2930.208 kb on + strand, within HP15_2778at 2930.210 kb on - strand, within HP15_2778at 2930.265 kb on + strand, within HP15_2778at 2930.267 kb on - strand, within HP15_2778at 2930.305 kb on + strand, within HP15_2778at 2930.402 kb on - strandat 2930.413 kb on + strandat 2930.494 kb on - strand, within HP15_2779at 2930.588 kb on + strand, within HP15_2779at 2930.603 kb on - strand, within HP15_2779at 2930.652 kb on + strand, within HP15_2779at 2930.662 kb on + strand, within HP15_2779at 2930.687 kb on + strand, within HP15_2779

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
remove
2,928,508 - -0.1
2,928,567 + +1.8
2,928,567 + +0.8
2,928,631 - HP15_2776 0.17 +0.2
2,928,636 - HP15_2776 0.17 +0.9
2,928,679 + HP15_2776 0.22 +1.3
2,928,759 + HP15_2776 0.31 +0.1
2,928,759 + HP15_2776 0.31 -0.4
2,928,813 + HP15_2776 0.37 +0.1
2,928,813 + HP15_2776 0.37 +0.8
2,928,816 + HP15_2776 0.37 -0.0
2,928,820 - HP15_2776 0.37 +0.3
2,928,820 - HP15_2776 0.37 +1.5
2,928,831 + HP15_2776 0.39 -0.3
2,928,999 - HP15_2776 0.57 +0.0
2,929,058 - HP15_2776 0.64 -1.8
2,929,127 - HP15_2776 0.71 +0.6
2,929,152 + HP15_2776 0.74 +1.7
2,929,232 - HP15_2776 0.83 -0.0
2,929,422 - -0.4
2,929,422 - +0.4
2,929,422 - +0.4
2,929,422 - -0.0
2,929,477 + +0.3
2,929,477 + +1.8
2,929,477 + +0.8
2,929,485 - +0.3
2,929,485 - -0.8
2,929,651 - HP15_2777 0.73 -0.4
2,929,743 - +1.1
2,929,799 + HP15_2778 0.10 +0.8
2,929,871 - HP15_2778 0.21 +1.0
2,929,886 - HP15_2778 0.23 -0.3
2,929,903 - HP15_2778 0.26 -0.2
2,930,088 - HP15_2778 0.53 +0.1
2,930,115 - HP15_2778 0.57 +0.6
2,930,202 + HP15_2778 0.70 -0.7
2,930,208 + HP15_2778 0.71 +1.7
2,930,210 - HP15_2778 0.71 -0.1
2,930,265 + HP15_2778 0.80 -0.2
2,930,267 - HP15_2778 0.80 -0.6
2,930,305 + HP15_2778 0.86 -0.7
2,930,402 - +0.2
2,930,413 + +0.3
2,930,494 - HP15_2779 0.11 -0.3
2,930,588 + HP15_2779 0.31 -0.3
2,930,603 - HP15_2779 0.34 +0.9
2,930,652 + HP15_2779 0.44 -0.8
2,930,662 + HP15_2779 0.46 -0.0
2,930,687 + HP15_2779 0.51 +0.3

Or see this region's nucleotide sequence