Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2710 and HP15_2711 are separated by 112 nucleotides HP15_2711 and HP15_2712 overlap by 22 nucleotides HP15_2712 and HP15_2713 are separated by 29 nucleotides
HP15_2710: HP15_2710 - L-lactate/malate dehydrogenase, at 2,863,008 to 2,863,931
_2710
HP15_2711: HP15_2711 - conserved hypothetical protein, membrane, at 2,864,044 to 2,864,925
_2711
HP15_2712: HP15_2712 - conserved hypothetical protein, at 2,864,904 to 2,865,197
_2712
HP15_2713: HP15_2713 - permease, major facilitator superfamily MFS-1, at 2,865,227 to 2,866,386
_2713
Position (kb)
2864
2865
2866 Strain fitness (log2 ratio)
-2
-1
0
1 at 2863.947 kb on + strand at 2863.947 kb on + strand at 2863.955 kb on - strand at 2863.955 kb on - strand at 2863.955 kb on - strand at 2863.957 kb on + strand at 2864.024 kb on - strand at 2864.146 kb on - strand, within HP15_2711 at 2864.187 kb on + strand, within HP15_2711 at 2864.195 kb on - strand, within HP15_2711 at 2864.339 kb on + strand, within HP15_2711 at 2864.353 kb on + strand, within HP15_2711 at 2864.368 kb on - strand, within HP15_2711 at 2864.478 kb on + strand, within HP15_2711 at 2864.741 kb on + strand, within HP15_2711 at 2864.858 kb on + strand at 2864.866 kb on - strand at 2864.941 kb on + strand, within HP15_2712 at 2864.948 kb on + strand, within HP15_2712 at 2864.948 kb on + strand, within HP15_2712 at 2864.958 kb on - strand, within HP15_2712 at 2865.307 kb on + strand at 2865.496 kb on + strand, within HP15_2713 at 2865.523 kb on - strand, within HP15_2713 at 2865.567 kb on - strand, within HP15_2713 at 2865.569 kb on + strand, within HP15_2713 at 2865.641 kb on + strand, within HP15_2713 at 2865.649 kb on - strand, within HP15_2713 at 2865.658 kb on + strand, within HP15_2713 at 2865.673 kb on + strand, within HP15_2713 at 2865.678 kb on + strand, within HP15_2713 at 2865.678 kb on + strand, within HP15_2713 at 2865.773 kb on - strand, within HP15_2713 at 2865.938 kb on + strand, within HP15_2713 at 2865.938 kb on + strand, within HP15_2713 at 2865.943 kb on + strand, within HP15_2713 at 2865.948 kb on + strand, within HP15_2713 at 2866.024 kb on + strand, within HP15_2713 at 2866.079 kb on - strand, within HP15_2713 at 2866.089 kb on - strand, within HP15_2713 at 2866.112 kb on - strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.169 kb on + strand, within HP15_2713 at 2866.192 kb on - strand, within HP15_2713
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 2,863,947 + +0.2 2,863,947 + +0.6 2,863,955 - -0.5 2,863,955 - -0.2 2,863,955 - -0.8 2,863,957 + -0.4 2,864,024 - +0.5 2,864,146 - HP15_2711 0.12 -1.3 2,864,187 + HP15_2711 0.16 -0.5 2,864,195 - HP15_2711 0.17 +0.7 2,864,339 + HP15_2711 0.33 +0.4 2,864,353 + HP15_2711 0.35 -0.3 2,864,368 - HP15_2711 0.37 -0.5 2,864,478 + HP15_2711 0.49 -0.1 2,864,741 + HP15_2711 0.79 +0.9 2,864,858 + -0.5 2,864,866 - +0.7 2,864,941 + HP15_2712 0.13 -2.5 2,864,948 + HP15_2712 0.15 -0.3 2,864,948 + HP15_2712 0.15 -0.5 2,864,958 - HP15_2712 0.18 -0.2 2,865,307 + +0.5 2,865,496 + HP15_2713 0.23 +0.7 2,865,523 - HP15_2713 0.26 -0.2 2,865,567 - HP15_2713 0.29 +0.1 2,865,569 + HP15_2713 0.29 +0.3 2,865,641 + HP15_2713 0.36 +0.1 2,865,649 - HP15_2713 0.36 -1.0 2,865,658 + HP15_2713 0.37 -0.0 2,865,673 + HP15_2713 0.38 +0.2 2,865,678 + HP15_2713 0.39 +0.4 2,865,678 + HP15_2713 0.39 -0.7 2,865,773 - HP15_2713 0.47 -0.0 2,865,938 + HP15_2713 0.61 +0.9 2,865,938 + HP15_2713 0.61 +0.0 2,865,943 + HP15_2713 0.62 -0.0 2,865,948 + HP15_2713 0.62 +0.5 2,866,024 + HP15_2713 0.69 +0.6 2,866,079 - HP15_2713 0.73 +0.6 2,866,089 - HP15_2713 0.74 -0.0 2,866,112 - HP15_2713 0.76 -0.4 2,866,122 + HP15_2713 0.77 +1.1 2,866,122 + HP15_2713 0.77 -0.8 2,866,169 + HP15_2713 0.81 +0.1 2,866,192 - HP15_2713 0.83 +1.1
Or see this region's nucleotide sequence