Strain Fitness in Marinobacter adhaerens HP15 around HP15_2712

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2710 and HP15_2711 are separated by 112 nucleotidesHP15_2711 and HP15_2712 overlap by 22 nucleotidesHP15_2712 and HP15_2713 are separated by 29 nucleotides HP15_2710: HP15_2710 - L-lactate/malate dehydrogenase, at 2,863,008 to 2,863,931 _2710 HP15_2711: HP15_2711 - conserved hypothetical protein, membrane, at 2,864,044 to 2,864,925 _2711 HP15_2712: HP15_2712 - conserved hypothetical protein, at 2,864,904 to 2,865,197 _2712 HP15_2713: HP15_2713 - permease, major facilitator superfamily MFS-1, at 2,865,227 to 2,866,386 _2713 Position (kb) 2864 2865 2866Strain fitness (log2 ratio) -2 -1 0 1at 2863.947 kb on + strandat 2863.947 kb on + strandat 2863.955 kb on - strandat 2863.955 kb on - strandat 2863.955 kb on - strandat 2863.957 kb on + strandat 2864.024 kb on - strandat 2864.146 kb on - strand, within HP15_2711at 2864.187 kb on + strand, within HP15_2711at 2864.195 kb on - strand, within HP15_2711at 2864.339 kb on + strand, within HP15_2711at 2864.353 kb on + strand, within HP15_2711at 2864.368 kb on - strand, within HP15_2711at 2864.478 kb on + strand, within HP15_2711at 2864.741 kb on + strand, within HP15_2711at 2864.858 kb on + strandat 2864.866 kb on - strandat 2864.941 kb on + strand, within HP15_2712at 2864.948 kb on + strand, within HP15_2712at 2864.948 kb on + strand, within HP15_2712at 2864.958 kb on - strand, within HP15_2712at 2865.307 kb on + strandat 2865.496 kb on + strand, within HP15_2713at 2865.523 kb on - strand, within HP15_2713at 2865.567 kb on - strand, within HP15_2713at 2865.569 kb on + strand, within HP15_2713at 2865.641 kb on + strand, within HP15_2713at 2865.649 kb on - strand, within HP15_2713at 2865.658 kb on + strand, within HP15_2713at 2865.673 kb on + strand, within HP15_2713at 2865.678 kb on + strand, within HP15_2713at 2865.678 kb on + strand, within HP15_2713at 2865.773 kb on - strand, within HP15_2713at 2865.938 kb on + strand, within HP15_2713at 2865.938 kb on + strand, within HP15_2713at 2865.943 kb on + strand, within HP15_2713at 2865.948 kb on + strand, within HP15_2713at 2866.024 kb on + strand, within HP15_2713at 2866.079 kb on - strand, within HP15_2713at 2866.089 kb on - strand, within HP15_2713at 2866.112 kb on - strand, within HP15_2713at 2866.122 kb on + strand, within HP15_2713at 2866.122 kb on + strand, within HP15_2713at 2866.169 kb on + strand, within HP15_2713at 2866.192 kb on - strand, within HP15_2713

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,863,947 + +0.2
2,863,947 + +0.6
2,863,955 - -0.5
2,863,955 - -0.2
2,863,955 - -0.8
2,863,957 + -0.4
2,864,024 - +0.5
2,864,146 - HP15_2711 0.12 -1.3
2,864,187 + HP15_2711 0.16 -0.5
2,864,195 - HP15_2711 0.17 +0.7
2,864,339 + HP15_2711 0.33 +0.4
2,864,353 + HP15_2711 0.35 -0.3
2,864,368 - HP15_2711 0.37 -0.5
2,864,478 + HP15_2711 0.49 -0.1
2,864,741 + HP15_2711 0.79 +0.9
2,864,858 + -0.5
2,864,866 - +0.7
2,864,941 + HP15_2712 0.13 -2.5
2,864,948 + HP15_2712 0.15 -0.3
2,864,948 + HP15_2712 0.15 -0.5
2,864,958 - HP15_2712 0.18 -0.2
2,865,307 + +0.5
2,865,496 + HP15_2713 0.23 +0.7
2,865,523 - HP15_2713 0.26 -0.2
2,865,567 - HP15_2713 0.29 +0.1
2,865,569 + HP15_2713 0.29 +0.3
2,865,641 + HP15_2713 0.36 +0.1
2,865,649 - HP15_2713 0.36 -1.0
2,865,658 + HP15_2713 0.37 -0.0
2,865,673 + HP15_2713 0.38 +0.2
2,865,678 + HP15_2713 0.39 +0.4
2,865,678 + HP15_2713 0.39 -0.7
2,865,773 - HP15_2713 0.47 -0.0
2,865,938 + HP15_2713 0.61 +0.9
2,865,938 + HP15_2713 0.61 +0.0
2,865,943 + HP15_2713 0.62 -0.0
2,865,948 + HP15_2713 0.62 +0.5
2,866,024 + HP15_2713 0.69 +0.6
2,866,079 - HP15_2713 0.73 +0.6
2,866,089 - HP15_2713 0.74 -0.0
2,866,112 - HP15_2713 0.76 -0.4
2,866,122 + HP15_2713 0.77 +1.1
2,866,122 + HP15_2713 0.77 -0.8
2,866,169 + HP15_2713 0.81 +0.1
2,866,192 - HP15_2713 0.83 +1.1

Or see this region's nucleotide sequence