Strain Fitness in Marinobacter adhaerens HP15 around HP15_2686

Experiment: L-Isoleucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2684 and HP15_2685 are separated by 31 nucleotidesHP15_2685 and HP15_2686 overlap by 4 nucleotidesHP15_2686 and HP15_2687 overlap by 11 nucleotidesHP15_2687 and HP15_2688 are separated by 38 nucleotides HP15_2684: HP15_2684 - TRAP-type C4-dicarboxylate transport system, large permease component, at 2,831,671 to 2,832,978 _2684 HP15_2685: HP15_2685 - UPF0271 protein, LamB/YcsF family, at 2,833,010 to 2,833,744 _2685 HP15_2686: HP15_2686 - allophanate hydrolase subunit 1, at 2,833,741 to 2,834,433 _2686 HP15_2687: HP15_2687 - urea amidolyase related protein, at 2,834,423 to 2,835,361 _2687 HP15_2688: HP15_2688 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,835,400 to 2,839,029 _2688 Position (kb) 2833 2834 2835Strain fitness (log2 ratio) -2 -1 0 1at 2832.791 kb on + strand, within HP15_2684at 2832.809 kb on - strand, within HP15_2684at 2832.826 kb on - strand, within HP15_2684at 2832.858 kb on - strandat 2833.008 kb on - strandat 2833.141 kb on - strand, within HP15_2685at 2833.197 kb on + strand, within HP15_2685at 2833.205 kb on - strand, within HP15_2685at 2833.249 kb on + strand, within HP15_2685at 2833.489 kb on + strand, within HP15_2685at 2833.584 kb on + strand, within HP15_2685at 2833.652 kb on - strand, within HP15_2685at 2833.889 kb on + strand, within HP15_2686at 2833.889 kb on + strand, within HP15_2686at 2833.894 kb on + strand, within HP15_2686at 2833.940 kb on + strand, within HP15_2686at 2834.049 kb on - strand, within HP15_2686at 2834.124 kb on + strand, within HP15_2686at 2834.176 kb on - strand, within HP15_2686at 2834.355 kb on + strand, within HP15_2686at 2834.526 kb on + strand, within HP15_2687at 2834.601 kb on + strand, within HP15_2687at 2834.713 kb on + strand, within HP15_2687at 2834.778 kb on + strand, within HP15_2687at 2834.877 kb on - strand, within HP15_2687at 2835.309 kb on + strandat 2835.351 kb on + strandat 2835.359 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
remove
2,832,791 + HP15_2684 0.86 -0.5
2,832,809 - HP15_2684 0.87 -0.1
2,832,826 - HP15_2684 0.88 +0.9
2,832,858 - +0.5
2,833,008 - -0.3
2,833,141 - HP15_2685 0.18 -1.9
2,833,197 + HP15_2685 0.25 -0.7
2,833,205 - HP15_2685 0.27 -1.3
2,833,249 + HP15_2685 0.33 -0.2
2,833,489 + HP15_2685 0.65 +0.3
2,833,584 + HP15_2685 0.78 +0.2
2,833,652 - HP15_2685 0.87 -0.2
2,833,889 + HP15_2686 0.21 -0.6
2,833,889 + HP15_2686 0.21 -1.3
2,833,894 + HP15_2686 0.22 -0.6
2,833,940 + HP15_2686 0.29 -0.2
2,834,049 - HP15_2686 0.44 +1.3
2,834,124 + HP15_2686 0.55 -0.6
2,834,176 - HP15_2686 0.63 +0.1
2,834,355 + HP15_2686 0.89 -1.5
2,834,526 + HP15_2687 0.11 -1.7
2,834,601 + HP15_2687 0.19 -2.2
2,834,713 + HP15_2687 0.31 -0.5
2,834,778 + HP15_2687 0.38 +0.1
2,834,877 - HP15_2687 0.48 +1.5
2,835,309 + -0.3
2,835,351 + +0.9
2,835,359 - +0.3

Or see this region's nucleotide sequence