Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2617 and HP15_2618 are separated by 61 nucleotides HP15_2618 and HP15_2619 are separated by 207 nucleotides HP15_2619 and HP15_2620 are separated by 133 nucleotides
HP15_2617: HP15_2617 - conserved hypothetical protein, secreted, at 2,769,300 to 2,769,890
_2617
HP15_2618: HP15_2618 - dodecin flavoprotein, at 2,769,952 to 2,770,152
_2618
HP15_2619: HP15_2619 - conserved hypothetical protein, secreted, at 2,770,360 to 2,771,129
_2619
HP15_2620: HP15_2620 - conserved hypothetical protein, at 2,771,263 to 2,772,579
_2620
Position (kb)
2770
2771
2772 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2769.387 kb on + strand, within HP15_2617 at 2769.405 kb on - strand, within HP15_2617 at 2769.649 kb on + strand, within HP15_2617 at 2769.707 kb on + strand, within HP15_2617 at 2769.795 kb on - strand, within HP15_2617 at 2770.086 kb on - strand, within HP15_2618 at 2770.088 kb on - strand, within HP15_2618 at 2770.280 kb on + strand at 2770.459 kb on + strand, within HP15_2619 at 2770.563 kb on - strand, within HP15_2619 at 2770.590 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.834 kb on - strand, within HP15_2619 at 2770.879 kb on - strand, within HP15_2619 at 2770.904 kb on + strand, within HP15_2619 at 2770.943 kb on - strand, within HP15_2619 at 2771.028 kb on - strand, within HP15_2619 at 2771.046 kb on - strand, within HP15_2619 at 2771.172 kb on + strand at 2771.352 kb on + strand at 2771.473 kb on - strand, within HP15_2620 at 2771.524 kb on + strand, within HP15_2620 at 2771.630 kb on + strand, within HP15_2620 at 2771.638 kb on - strand, within HP15_2620 at 2771.668 kb on - strand, within HP15_2620 at 2771.680 kb on + strand, within HP15_2620 at 2771.728 kb on + strand, within HP15_2620 at 2771.756 kb on + strand, within HP15_2620 at 2771.761 kb on + strand, within HP15_2620 at 2771.793 kb on - strand, within HP15_2620 at 2771.914 kb on - strand, within HP15_2620 at 2771.968 kb on - strand, within HP15_2620 at 2772.018 kb on - strand, within HP15_2620
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 2,769,387 + HP15_2617 0.15 -0.0 2,769,405 - HP15_2617 0.18 +1.0 2,769,649 + HP15_2617 0.59 +0.9 2,769,707 + HP15_2617 0.69 +0.1 2,769,795 - HP15_2617 0.84 -0.1 2,770,086 - HP15_2618 0.67 +0.5 2,770,088 - HP15_2618 0.68 -0.4 2,770,280 + -0.2 2,770,459 + HP15_2619 0.13 -0.2 2,770,563 - HP15_2619 0.26 +0.1 2,770,590 - HP15_2619 0.30 +3.1 2,770,710 - HP15_2619 0.45 -0.1 2,770,710 - HP15_2619 0.45 -0.3 2,770,710 - HP15_2619 0.45 +1.7 2,770,834 - HP15_2619 0.62 +0.2 2,770,879 - HP15_2619 0.67 +0.3 2,770,904 + HP15_2619 0.71 +0.8 2,770,943 - HP15_2619 0.76 -0.2 2,771,028 - HP15_2619 0.87 +1.5 2,771,046 - HP15_2619 0.89 +0.6 2,771,172 + -0.9 2,771,352 + +0.7 2,771,473 - HP15_2620 0.16 +0.1 2,771,524 + HP15_2620 0.20 -0.1 2,771,630 + HP15_2620 0.28 -0.3 2,771,638 - HP15_2620 0.28 +1.0 2,771,668 - HP15_2620 0.31 +0.2 2,771,680 + HP15_2620 0.32 -0.6 2,771,728 + HP15_2620 0.35 +0.5 2,771,756 + HP15_2620 0.37 +0.5 2,771,761 + HP15_2620 0.38 +0.2 2,771,793 - HP15_2620 0.40 +0.9 2,771,914 - HP15_2620 0.49 -0.0 2,771,968 - HP15_2620 0.54 +0.0 2,772,018 - HP15_2620 0.57 -0.9
Or see this region's nucleotide sequence