Strain Fitness in Marinobacter adhaerens HP15 around HP15_2535

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2533 and HP15_2534 are separated by 18 nucleotidesHP15_2534 and HP15_2535 are separated by 21 nucleotidesHP15_2535 and HP15_2536 are separated by 106 nucleotides HP15_2533: HP15_2533 - conserved hypothetical protein, secreted, at 2,677,937 to 2,679,001 _2533 HP15_2534: HP15_2534 - hypothetical protein, at 2,679,020 to 2,679,184 _2534 HP15_2535: HP15_2535 - transcriptional regulator, TetR family, at 2,679,206 to 2,679,865 _2535 HP15_2536: HP15_2536 - protein containing DUF1446, at 2,679,972 to 2,681,768 _2536 Position (kb) 2679 2680Strain fitness (log2 ratio) -1 0 1at 2678.257 kb on - strand, within HP15_2533at 2678.521 kb on - strand, within HP15_2533at 2678.777 kb on - strand, within HP15_2533at 2678.790 kb on + strand, within HP15_2533at 2678.880 kb on - strand, within HP15_2533at 2678.880 kb on - strand, within HP15_2533at 2678.954 kb on - strandat 2678.954 kb on - strandat 2679.056 kb on - strand, within HP15_2534at 2679.150 kb on + strand, within HP15_2534at 2679.250 kb on + strandat 2679.250 kb on + strandat 2679.278 kb on - strand, within HP15_2535at 2679.306 kb on + strand, within HP15_2535at 2679.314 kb on - strand, within HP15_2535at 2679.551 kb on + strand, within HP15_2535at 2679.551 kb on + strand, within HP15_2535at 2679.559 kb on - strand, within HP15_2535at 2679.569 kb on - strand, within HP15_2535at 2679.576 kb on + strand, within HP15_2535at 2679.576 kb on + strand, within HP15_2535at 2679.823 kb on - strandat 2679.983 kb on + strandat 2679.991 kb on - strandat 2680.143 kb on + strandat 2680.143 kb on + strandat 2680.143 kb on + strandat 2680.151 kb on - strandat 2680.158 kb on - strand, within HP15_2536at 2680.199 kb on + strand, within HP15_2536at 2680.460 kb on - strand, within HP15_2536at 2680.605 kb on + strand, within HP15_2536at 2680.611 kb on - strand, within HP15_2536at 2680.613 kb on - strand, within HP15_2536at 2680.613 kb on - strand, within HP15_2536at 2680.830 kb on + strand, within HP15_2536at 2680.831 kb on + strand, within HP15_2536at 2680.839 kb on - strand, within HP15_2536at 2680.839 kb on - strand, within HP15_2536at 2680.841 kb on + strand, within HP15_2536

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,678,257 - HP15_2533 0.30 -0.5
2,678,521 - HP15_2533 0.55 +0.3
2,678,777 - HP15_2533 0.79 +0.1
2,678,790 + HP15_2533 0.80 +0.8
2,678,880 - HP15_2533 0.89 -0.1
2,678,880 - HP15_2533 0.89 +0.0
2,678,954 - -0.6
2,678,954 - -0.4
2,679,056 - HP15_2534 0.22 +0.4
2,679,150 + HP15_2534 0.79 -1.1
2,679,250 + +0.3
2,679,250 + +1.3
2,679,278 - HP15_2535 0.11 -0.5
2,679,306 + HP15_2535 0.15 -0.5
2,679,314 - HP15_2535 0.16 -0.7
2,679,551 + HP15_2535 0.52 +0.5
2,679,551 + HP15_2535 0.52 -1.7
2,679,559 - HP15_2535 0.53 -0.8
2,679,569 - HP15_2535 0.55 -1.0
2,679,576 + HP15_2535 0.56 -0.8
2,679,576 + HP15_2535 0.56 -0.6
2,679,823 - -0.2
2,679,983 + -0.2
2,679,991 - -0.6
2,680,143 + +0.6
2,680,143 + +0.1
2,680,143 + +0.6
2,680,151 - +0.6
2,680,158 - HP15_2536 0.10 +1.0
2,680,199 + HP15_2536 0.13 +0.7
2,680,460 - HP15_2536 0.27 +0.9
2,680,605 + HP15_2536 0.35 +0.7
2,680,611 - HP15_2536 0.36 +1.1
2,680,613 - HP15_2536 0.36 -0.5
2,680,613 - HP15_2536 0.36 -0.7
2,680,830 + HP15_2536 0.48 -0.4
2,680,831 + HP15_2536 0.48 -0.5
2,680,839 - HP15_2536 0.48 +0.5
2,680,839 - HP15_2536 0.48 +0.4
2,680,841 + HP15_2536 0.48 -0.6

Or see this region's nucleotide sequence