Strain Fitness in Marinobacter adhaerens HP15 around HP15_2501

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2500 and HP15_2501 are separated by 1 nucleotidesHP15_2501 and HP15_2502 are separated by 35 nucleotides HP15_2500: HP15_2500 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 2,639,438 to 2,640,631 _2500 HP15_2501: HP15_2501 - DNA mismatch repair protein mutL, at 2,640,633 to 2,642,527 _2501 HP15_2502: HP15_2502 - N-acetylmuramoyl-L-alanine amidase-like protein, at 2,642,563 to 2,643,921 _2502 Position (kb) 2640 2641 2642 2643Strain fitness (log2 ratio) -3 -2 -1 0 1at 2640.736 kb on + strandat 2640.816 kb on - strandat 2640.877 kb on + strand, within HP15_2501at 2640.922 kb on + strand, within HP15_2501at 2641.013 kb on - strand, within HP15_2501at 2641.115 kb on + strand, within HP15_2501at 2641.280 kb on - strand, within HP15_2501at 2642.109 kb on - strand, within HP15_2501at 2642.220 kb on - strand, within HP15_2501at 2642.221 kb on - strand, within HP15_2501at 2642.594 kb on + strandat 2642.618 kb on + strandat 2642.753 kb on + strand, within HP15_2502

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,640,736 + -2.9
2,640,816 - -0.6
2,640,877 + HP15_2501 0.13 -1.2
2,640,922 + HP15_2501 0.15 -1.0
2,641,013 - HP15_2501 0.20 +1.0
2,641,115 + HP15_2501 0.25 -2.0
2,641,280 - HP15_2501 0.34 -0.7
2,642,109 - HP15_2501 0.78 -1.5
2,642,220 - HP15_2501 0.84 -0.4
2,642,221 - HP15_2501 0.84 -1.4
2,642,594 + +0.3
2,642,618 + -0.8
2,642,753 + HP15_2502 0.14 -0.2

Or see this region's nucleotide sequence