Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2462 and HP15_2463 are separated by 1 nucleotides HP15_2463 and HP15_2464 are separated by 412 nucleotides
HP15_2462: HP15_2462 - sulfate adenylyltransferase, small subunit, at 2,600,842 to 2,601,750
_2462
HP15_2463: HP15_2463 - sulfate adenylyltransferase, large subunit, at 2,601,752 to 2,603,410
_2463
HP15_2464: HP15_2464 - nucleoid-associated protein NdpA, at 2,603,823 to 2,604,839
_2464
Position (kb)
2601
2602
2603
2604 Strain fitness (log2 ratio)
-2
-1
0
1 at 2600.775 kb on - strand at 2600.798 kb on + strand at 2600.816 kb on - strand at 2600.966 kb on - strand, within HP15_2462 at 2600.977 kb on - strand, within HP15_2462 at 2600.977 kb on - strand, within HP15_2462 at 2600.980 kb on + strand, within HP15_2462 at 2601.087 kb on - strand, within HP15_2462 at 2601.092 kb on + strand, within HP15_2462 at 2601.124 kb on + strand, within HP15_2462 at 2601.159 kb on - strand, within HP15_2462 at 2601.234 kb on + strand, within HP15_2462 at 2601.301 kb on + strand, within HP15_2462 at 2601.372 kb on + strand at 2601.380 kb on - strand, within HP15_2462 at 2601.390 kb on - strand, within HP15_2462 at 2601.415 kb on - strand, within HP15_2462 at 2601.598 kb on + strand, within HP15_2462 at 2601.603 kb on + strand, within HP15_2462 at 2601.747 kb on - strand at 2601.762 kb on + strand at 2601.770 kb on - strand at 2601.785 kb on + strand at 2601.795 kb on + strand at 2601.795 kb on + strand at 2601.966 kb on + strand, within HP15_2463 at 2602.023 kb on + strand, within HP15_2463 at 2602.102 kb on - strand, within HP15_2463 at 2602.172 kb on + strand, within HP15_2463 at 2602.319 kb on + strand, within HP15_2463 at 2602.346 kb on + strand, within HP15_2463 at 2602.360 kb on + strand, within HP15_2463 at 2602.440 kb on + strand, within HP15_2463 at 2602.578 kb on - strand, within HP15_2463 at 2602.585 kb on - strand, within HP15_2463 at 2602.650 kb on - strand, within HP15_2463 at 2602.779 kb on + strand, within HP15_2463 at 2602.824 kb on + strand, within HP15_2463 at 2602.831 kb on - strand, within HP15_2463 at 2602.831 kb on - strand, within HP15_2463 at 2602.831 kb on - strand, within HP15_2463 at 2602.856 kb on + strand, within HP15_2463 at 2603.031 kb on + strand, within HP15_2463 at 2603.039 kb on - strand, within HP15_2463 at 2603.157 kb on - strand, within HP15_2463 at 2603.183 kb on - strand, within HP15_2463 at 2603.183 kb on - strand, within HP15_2463 at 2603.191 kb on - strand, within HP15_2463 at 2603.202 kb on - strand, within HP15_2463 at 2603.303 kb on - strand at 2603.418 kb on + strand at 2603.553 kb on + strand at 2603.613 kb on + strand at 2603.621 kb on - strand at 2603.623 kb on + strand at 2603.777 kb on + strand at 2603.779 kb on - strand at 2603.792 kb on - strand at 2603.792 kb on - strand at 2603.792 kb on - strand at 2603.847 kb on + strand at 2603.861 kb on + strand at 2603.931 kb on + strand, within HP15_2464 at 2603.965 kb on - strand, within HP15_2464 at 2604.000 kb on + strand, within HP15_2464 at 2604.110 kb on - strand, within HP15_2464 at 2604.123 kb on - strand, within HP15_2464 at 2604.328 kb on + strand, within HP15_2464
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 2,600,775 - -0.0 2,600,798 + +0.2 2,600,816 - -1.1 2,600,966 - HP15_2462 0.14 +0.2 2,600,977 - HP15_2462 0.15 +0.1 2,600,977 - HP15_2462 0.15 +1.5 2,600,980 + HP15_2462 0.15 -0.9 2,601,087 - HP15_2462 0.27 -1.1 2,601,092 + HP15_2462 0.28 -0.2 2,601,124 + HP15_2462 0.31 -2.6 2,601,159 - HP15_2462 0.35 -1.5 2,601,234 + HP15_2462 0.43 -1.5 2,601,301 + HP15_2462 0.50 -0.1 2,601,372 + -1.1 2,601,380 - HP15_2462 0.59 -0.7 2,601,390 - HP15_2462 0.60 -1.2 2,601,415 - HP15_2462 0.63 -0.4 2,601,598 + HP15_2462 0.83 -1.1 2,601,603 + HP15_2462 0.84 -0.6 2,601,747 - -2.1 2,601,762 + -1.3 2,601,770 - -1.2 2,601,785 + -0.8 2,601,795 + +0.1 2,601,795 + -0.4 2,601,966 + HP15_2463 0.13 -1.7 2,602,023 + HP15_2463 0.16 -0.9 2,602,102 - HP15_2463 0.21 -1.6 2,602,172 + HP15_2463 0.25 -0.3 2,602,319 + HP15_2463 0.34 -1.3 2,602,346 + HP15_2463 0.36 -1.7 2,602,360 + HP15_2463 0.37 -1.6 2,602,440 + HP15_2463 0.41 -1.0 2,602,578 - HP15_2463 0.50 -0.9 2,602,585 - HP15_2463 0.50 +0.2 2,602,650 - HP15_2463 0.54 -0.1 2,602,779 + HP15_2463 0.62 -0.5 2,602,824 + HP15_2463 0.65 -1.0 2,602,831 - HP15_2463 0.65 -1.1 2,602,831 - HP15_2463 0.65 -0.2 2,602,831 - HP15_2463 0.65 +0.1 2,602,856 + HP15_2463 0.67 -1.2 2,603,031 + HP15_2463 0.77 -0.9 2,603,039 - HP15_2463 0.78 -0.6 2,603,157 - HP15_2463 0.85 -0.8 2,603,183 - HP15_2463 0.86 -1.6 2,603,183 - HP15_2463 0.86 -1.0 2,603,191 - HP15_2463 0.87 -0.7 2,603,202 - HP15_2463 0.87 -0.5 2,603,303 - +0.3 2,603,418 + -0.7 2,603,553 + +0.6 2,603,613 + +0.8 2,603,621 - -0.5 2,603,623 + +0.4 2,603,777 + +0.7 2,603,779 - +0.8 2,603,792 - +0.8 2,603,792 - +0.5 2,603,792 - -0.1 2,603,847 + +0.0 2,603,861 + +0.8 2,603,931 + HP15_2464 0.11 +0.0 2,603,965 - HP15_2464 0.14 +0.3 2,604,000 + HP15_2464 0.17 +0.2 2,604,110 - HP15_2464 0.28 -0.2 2,604,123 - HP15_2464 0.29 -0.4 2,604,328 + HP15_2464 0.50 -0.5
Or see this region's nucleotide sequence