Strain Fitness in Marinobacter adhaerens HP15 around HP15_2463

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2462 and HP15_2463 are separated by 1 nucleotidesHP15_2463 and HP15_2464 are separated by 412 nucleotides HP15_2462: HP15_2462 - sulfate adenylyltransferase, small subunit, at 2,600,842 to 2,601,750 _2462 HP15_2463: HP15_2463 - sulfate adenylyltransferase, large subunit, at 2,601,752 to 2,603,410 _2463 HP15_2464: HP15_2464 - nucleoid-associated protein NdpA, at 2,603,823 to 2,604,839 _2464 Position (kb) 2601 2602 2603 2604Strain fitness (log2 ratio) -2 -1 0 1at 2600.775 kb on - strandat 2600.798 kb on + strandat 2600.816 kb on - strandat 2600.966 kb on - strand, within HP15_2462at 2600.977 kb on - strand, within HP15_2462at 2600.977 kb on - strand, within HP15_2462at 2600.980 kb on + strand, within HP15_2462at 2601.087 kb on - strand, within HP15_2462at 2601.092 kb on + strand, within HP15_2462at 2601.124 kb on + strand, within HP15_2462at 2601.159 kb on - strand, within HP15_2462at 2601.234 kb on + strand, within HP15_2462at 2601.301 kb on + strand, within HP15_2462at 2601.372 kb on + strandat 2601.380 kb on - strand, within HP15_2462at 2601.390 kb on - strand, within HP15_2462at 2601.415 kb on - strand, within HP15_2462at 2601.598 kb on + strand, within HP15_2462at 2601.603 kb on + strand, within HP15_2462at 2601.747 kb on - strandat 2601.762 kb on + strandat 2601.770 kb on - strandat 2601.785 kb on + strandat 2601.795 kb on + strandat 2601.795 kb on + strandat 2601.966 kb on + strand, within HP15_2463at 2602.023 kb on + strand, within HP15_2463at 2602.102 kb on - strand, within HP15_2463at 2602.172 kb on + strand, within HP15_2463at 2602.319 kb on + strand, within HP15_2463at 2602.346 kb on + strand, within HP15_2463at 2602.360 kb on + strand, within HP15_2463at 2602.440 kb on + strand, within HP15_2463at 2602.578 kb on - strand, within HP15_2463at 2602.585 kb on - strand, within HP15_2463at 2602.650 kb on - strand, within HP15_2463at 2602.779 kb on + strand, within HP15_2463at 2602.824 kb on + strand, within HP15_2463at 2602.831 kb on - strand, within HP15_2463at 2602.831 kb on - strand, within HP15_2463at 2602.831 kb on - strand, within HP15_2463at 2602.856 kb on + strand, within HP15_2463at 2603.031 kb on + strand, within HP15_2463at 2603.039 kb on - strand, within HP15_2463at 2603.157 kb on - strand, within HP15_2463at 2603.183 kb on - strand, within HP15_2463at 2603.183 kb on - strand, within HP15_2463at 2603.191 kb on - strand, within HP15_2463at 2603.202 kb on - strand, within HP15_2463at 2603.303 kb on - strandat 2603.418 kb on + strandat 2603.553 kb on + strandat 2603.613 kb on + strandat 2603.621 kb on - strandat 2603.623 kb on + strandat 2603.777 kb on + strandat 2603.779 kb on - strandat 2603.792 kb on - strandat 2603.792 kb on - strandat 2603.792 kb on - strandat 2603.847 kb on + strandat 2603.861 kb on + strandat 2603.931 kb on + strand, within HP15_2464at 2603.965 kb on - strand, within HP15_2464at 2604.000 kb on + strand, within HP15_2464at 2604.110 kb on - strand, within HP15_2464at 2604.123 kb on - strand, within HP15_2464at 2604.328 kb on + strand, within HP15_2464

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,600,775 - -0.0
2,600,798 + +0.2
2,600,816 - -1.1
2,600,966 - HP15_2462 0.14 +0.2
2,600,977 - HP15_2462 0.15 +0.1
2,600,977 - HP15_2462 0.15 +1.5
2,600,980 + HP15_2462 0.15 -0.9
2,601,087 - HP15_2462 0.27 -1.1
2,601,092 + HP15_2462 0.28 -0.2
2,601,124 + HP15_2462 0.31 -2.6
2,601,159 - HP15_2462 0.35 -1.5
2,601,234 + HP15_2462 0.43 -1.5
2,601,301 + HP15_2462 0.50 -0.1
2,601,372 + -1.1
2,601,380 - HP15_2462 0.59 -0.7
2,601,390 - HP15_2462 0.60 -1.2
2,601,415 - HP15_2462 0.63 -0.4
2,601,598 + HP15_2462 0.83 -1.1
2,601,603 + HP15_2462 0.84 -0.6
2,601,747 - -2.1
2,601,762 + -1.3
2,601,770 - -1.2
2,601,785 + -0.8
2,601,795 + +0.1
2,601,795 + -0.4
2,601,966 + HP15_2463 0.13 -1.7
2,602,023 + HP15_2463 0.16 -0.9
2,602,102 - HP15_2463 0.21 -1.6
2,602,172 + HP15_2463 0.25 -0.3
2,602,319 + HP15_2463 0.34 -1.3
2,602,346 + HP15_2463 0.36 -1.7
2,602,360 + HP15_2463 0.37 -1.6
2,602,440 + HP15_2463 0.41 -1.0
2,602,578 - HP15_2463 0.50 -0.9
2,602,585 - HP15_2463 0.50 +0.2
2,602,650 - HP15_2463 0.54 -0.1
2,602,779 + HP15_2463 0.62 -0.5
2,602,824 + HP15_2463 0.65 -1.0
2,602,831 - HP15_2463 0.65 -1.1
2,602,831 - HP15_2463 0.65 -0.2
2,602,831 - HP15_2463 0.65 +0.1
2,602,856 + HP15_2463 0.67 -1.2
2,603,031 + HP15_2463 0.77 -0.9
2,603,039 - HP15_2463 0.78 -0.6
2,603,157 - HP15_2463 0.85 -0.8
2,603,183 - HP15_2463 0.86 -1.6
2,603,183 - HP15_2463 0.86 -1.0
2,603,191 - HP15_2463 0.87 -0.7
2,603,202 - HP15_2463 0.87 -0.5
2,603,303 - +0.3
2,603,418 + -0.7
2,603,553 + +0.6
2,603,613 + +0.8
2,603,621 - -0.5
2,603,623 + +0.4
2,603,777 + +0.7
2,603,779 - +0.8
2,603,792 - +0.8
2,603,792 - +0.5
2,603,792 - -0.1
2,603,847 + +0.0
2,603,861 + +0.8
2,603,931 + HP15_2464 0.11 +0.0
2,603,965 - HP15_2464 0.14 +0.3
2,604,000 + HP15_2464 0.17 +0.2
2,604,110 - HP15_2464 0.28 -0.2
2,604,123 - HP15_2464 0.29 -0.4
2,604,328 + HP15_2464 0.50 -0.5

Or see this region's nucleotide sequence