Strain Fitness in Marinobacter adhaerens HP15 around HP15_2424

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2423 and HP15_2424 are separated by 129 nucleotidesHP15_2424 and HP15_2425 are separated by 195 nucleotidesHP15_2425 and HP15_2426 are separated by 227 nucleotides HP15_2423: HP15_2423 - acyl-CoA thiolase, at 2,564,023 to 2,565,162 _2423 HP15_2424: HP15_2424 - AFG1-family ATPase, at 2,565,292 to 2,566,425 _2424 HP15_2425: HP15_2425 - membrane or secreted protein containing DUF1043, at 2,566,621 to 2,567,061 _2425 HP15_2426: HP15_2426 - NGG1p interacting factor 3, NIF3, at 2,567,289 to 2,568,032 _2426 Position (kb) 2565 2566 2567Strain fitness (log2 ratio) -2 -1 0 1at 2564.345 kb on + strand, within HP15_2423at 2564.391 kb on - strand, within HP15_2423at 2564.447 kb on - strand, within HP15_2423at 2564.609 kb on + strand, within HP15_2423at 2564.649 kb on + strand, within HP15_2423at 2564.654 kb on - strand, within HP15_2423at 2564.686 kb on + strand, within HP15_2423at 2564.694 kb on - strand, within HP15_2423at 2564.751 kb on + strand, within HP15_2423at 2564.759 kb on - strand, within HP15_2423at 2564.767 kb on + strand, within HP15_2423at 2564.791 kb on + strand, within HP15_2423at 2564.848 kb on - strand, within HP15_2423at 2564.899 kb on - strand, within HP15_2423at 2565.078 kb on - strandat 2565.085 kb on + strandat 2565.119 kb on - strandat 2565.134 kb on - strandat 2565.136 kb on + strandat 2565.218 kb on + strandat 2565.257 kb on + strandat 2565.265 kb on - strandat 2565.265 kb on - strandat 2565.265 kb on - strandat 2565.272 kb on + strandat 2565.301 kb on + strandat 2565.316 kb on - strandat 2566.288 kb on + strand, within HP15_2424at 2566.392 kb on - strandat 2566.431 kb on - strandat 2566.571 kb on - strandat 2566.684 kb on - strand, within HP15_2425at 2566.903 kb on - strand, within HP15_2425at 2566.988 kb on - strand, within HP15_2425at 2567.101 kb on + strandat 2567.327 kb on + strandat 2567.381 kb on - strand, within HP15_2426at 2567.410 kb on + strand, within HP15_2426

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,564,345 + HP15_2423 0.28 +0.5
2,564,391 - HP15_2423 0.32 -1.4
2,564,447 - HP15_2423 0.37 +0.7
2,564,609 + HP15_2423 0.51 +0.8
2,564,649 + HP15_2423 0.55 -0.3
2,564,654 - HP15_2423 0.55 +0.2
2,564,686 + HP15_2423 0.58 -0.9
2,564,694 - HP15_2423 0.59 +0.6
2,564,751 + HP15_2423 0.64 -0.3
2,564,759 - HP15_2423 0.65 -0.5
2,564,767 + HP15_2423 0.65 +1.0
2,564,791 + HP15_2423 0.67 -0.2
2,564,848 - HP15_2423 0.72 -1.0
2,564,899 - HP15_2423 0.77 +1.2
2,565,078 - -0.5
2,565,085 + +0.1
2,565,119 - -0.3
2,565,134 - -0.6
2,565,136 + -0.3
2,565,218 + -0.6
2,565,257 + -0.2
2,565,265 - -0.5
2,565,265 - -0.6
2,565,265 - -0.4
2,565,272 + +0.5
2,565,301 + -0.1
2,565,316 - -0.1
2,566,288 + HP15_2424 0.88 -2.0
2,566,392 - -0.9
2,566,431 - -0.7
2,566,571 - -0.6
2,566,684 - HP15_2425 0.14 +0.1
2,566,903 - HP15_2425 0.64 +0.2
2,566,988 - HP15_2425 0.83 -0.5
2,567,101 + +0.5
2,567,327 + -0.3
2,567,381 - HP15_2426 0.12 +0.4
2,567,410 + HP15_2426 0.16 +0.0

Or see this region's nucleotide sequence