Strain Fitness in Marinobacter adhaerens HP15 around HP15_2415

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2413 and HP15_2414 overlap by 1 nucleotidesHP15_2414 and HP15_2415 are separated by 43 nucleotidesHP15_2415 and HP15_2416 are separated by 95 nucleotidesHP15_2416 and HP15_2417 are separated by 112 nucleotides HP15_2413: HP15_2413 - conserved hypothetical protein, secreted, at 2,547,991 to 2,549,085 _2413 HP15_2414: HP15_2414 - protein containing uncharacterized protein family UPF0066 domains, at 2,549,085 to 2,549,828 _2414 HP15_2415: HP15_2415 - sensory box sensor histidine kinase/response regulator, at 2,549,872 to 2,552,223 _2415 HP15_2416: HP15_2416 - zinc-binding protein, at 2,552,319 to 2,552,474 _2416 HP15_2417: HP15_2417 - YfaZ family protein, at 2,552,587 to 2,553,144 _2417 Position (kb) 2549 2550 2551 2552 2553Strain fitness (log2 ratio) -1 0 1at 2548.898 kb on - strand, within HP15_2413at 2549.009 kb on + strandat 2549.017 kb on - strandat 2549.185 kb on + strand, within HP15_2414at 2549.415 kb on - strand, within HP15_2414at 2549.556 kb on + strand, within HP15_2414at 2549.564 kb on - strand, within HP15_2414at 2549.672 kb on + strand, within HP15_2414at 2549.748 kb on + strand, within HP15_2414at 2549.906 kb on - strandat 2549.936 kb on + strandat 2550.054 kb on - strandat 2550.177 kb on - strand, within HP15_2415at 2550.306 kb on - strand, within HP15_2415at 2550.316 kb on - strand, within HP15_2415at 2550.339 kb on - strand, within HP15_2415at 2550.702 kb on - strand, within HP15_2415at 2550.702 kb on - strand, within HP15_2415at 2550.742 kb on - strand, within HP15_2415at 2551.056 kb on - strand, within HP15_2415at 2551.058 kb on + strand, within HP15_2415at 2551.205 kb on + strand, within HP15_2415at 2551.213 kb on - strand, within HP15_2415at 2551.405 kb on - strand, within HP15_2415at 2551.607 kb on - strand, within HP15_2415at 2551.860 kb on + strand, within HP15_2415at 2551.936 kb on + strand, within HP15_2415at 2552.004 kb on - strandat 2552.023 kb on - strandat 2552.298 kb on + strandat 2552.364 kb on - strand, within HP15_2416at 2552.448 kb on - strand, within HP15_2416at 2552.468 kb on + strandat 2552.476 kb on - strandat 2552.733 kb on + strand, within HP15_2417at 2552.862 kb on - strand, within HP15_2417

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,548,898 - HP15_2413 0.83 -0.6
2,549,009 + -1.0
2,549,017 - +0.8
2,549,185 + HP15_2414 0.13 +0.5
2,549,415 - HP15_2414 0.44 +0.3
2,549,556 + HP15_2414 0.63 +0.9
2,549,564 - HP15_2414 0.64 -1.0
2,549,672 + HP15_2414 0.79 -0.5
2,549,748 + HP15_2414 0.89 +0.5
2,549,906 - -1.4
2,549,936 + -0.7
2,550,054 - -0.9
2,550,177 - HP15_2415 0.13 -0.5
2,550,306 - HP15_2415 0.18 -0.4
2,550,316 - HP15_2415 0.19 -1.1
2,550,339 - HP15_2415 0.20 +0.0
2,550,702 - HP15_2415 0.35 -0.0
2,550,702 - HP15_2415 0.35 -0.4
2,550,742 - HP15_2415 0.37 -1.0
2,551,056 - HP15_2415 0.50 +0.0
2,551,058 + HP15_2415 0.50 +0.3
2,551,205 + HP15_2415 0.57 -1.1
2,551,213 - HP15_2415 0.57 -0.1
2,551,405 - HP15_2415 0.65 -1.3
2,551,607 - HP15_2415 0.74 -1.0
2,551,860 + HP15_2415 0.85 +0.1
2,551,936 + HP15_2415 0.88 -0.1
2,552,004 - -1.0
2,552,023 - -0.5
2,552,298 + -0.2
2,552,364 - HP15_2416 0.29 -0.2
2,552,448 - HP15_2416 0.83 +0.6
2,552,468 + +0.5
2,552,476 - +0.2
2,552,733 + HP15_2417 0.26 -0.7
2,552,862 - HP15_2417 0.49 -1.1

Or see this region's nucleotide sequence