Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2400 and HP15_2401 overlap by 1 nucleotides HP15_2401 and HP15_2402 are separated by 32 nucleotides
HP15_2400: HP15_2400 - lipopolysaccharide biosynthesis protein, at 2,532,030 to 2,532,995
_2400
HP15_2401: HP15_2401 - polysaccharide biosynthesis/export protein, at 2,532,995 to 2,535,532
_2401
HP15_2402: HP15_2402 - conserved hypothetical protein, at 2,535,565 to 2,536,908
_2402
Position (kb)
2532
2533
2534
2535
2536 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2532.136 kb on + strand, within HP15_2400 at 2532.173 kb on + strand, within HP15_2400 at 2532.173 kb on + strand, within HP15_2400 at 2532.269 kb on - strand, within HP15_2400 at 2532.534 kb on + strand, within HP15_2400 at 2532.534 kb on + strand, within HP15_2400 at 2532.604 kb on + strand, within HP15_2400 at 2532.631 kb on - strand, within HP15_2400 at 2532.666 kb on + strand, within HP15_2400 at 2532.795 kb on + strand, within HP15_2400 at 2532.803 kb on - strand, within HP15_2400 at 2532.805 kb on + strand, within HP15_2400 at 2532.926 kb on + strand at 2532.954 kb on - strand at 2533.041 kb on + strand at 2533.051 kb on + strand at 2533.219 kb on + strand at 2533.317 kb on - strand, within HP15_2401 at 2533.441 kb on - strand, within HP15_2401 at 2533.660 kb on + strand, within HP15_2401 at 2533.680 kb on - strand, within HP15_2401 at 2533.692 kb on + strand, within HP15_2401 at 2533.749 kb on + strand, within HP15_2401 at 2533.766 kb on + strand, within HP15_2401 at 2534.255 kb on - strand, within HP15_2401 at 2534.291 kb on + strand, within HP15_2401 at 2534.404 kb on + strand, within HP15_2401 at 2534.482 kb on - strand, within HP15_2401 at 2534.556 kb on + strand, within HP15_2401 at 2534.563 kb on + strand, within HP15_2401 at 2534.564 kb on - strand, within HP15_2401 at 2534.570 kb on + strand, within HP15_2401 at 2534.571 kb on - strand, within HP15_2401 at 2534.599 kb on + strand, within HP15_2401 at 2534.733 kb on + strand, within HP15_2401 at 2534.741 kb on - strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.861 kb on + strand, within HP15_2401 at 2534.870 kb on + strand, within HP15_2401 at 2534.878 kb on - strand, within HP15_2401 at 2534.938 kb on + strand, within HP15_2401 at 2534.943 kb on + strand, within HP15_2401 at 2535.011 kb on + strand, within HP15_2401 at 2535.011 kb on + strand, within HP15_2401 at 2535.175 kb on + strand, within HP15_2401 at 2535.361 kb on + strand at 2535.388 kb on - strand at 2535.390 kb on + strand at 2535.423 kb on + strand at 2535.423 kb on + strand at 2535.431 kb on - strand at 2535.431 kb on - strand at 2535.477 kb on - strand at 2535.480 kb on - strand at 2535.480 kb on - strand at 2535.491 kb on + strand at 2535.759 kb on + strand, within HP15_2402 at 2535.764 kb on + strand, within HP15_2402 at 2535.767 kb on - strand, within HP15_2402 at 2535.800 kb on - strand, within HP15_2402 at 2535.899 kb on - strand, within HP15_2402 at 2535.921 kb on + strand, within HP15_2402 at 2536.033 kb on + strand, within HP15_2402 at 2536.052 kb on + strand, within HP15_2402 at 2536.052 kb on + strand, within HP15_2402 at 2536.150 kb on - strand, within HP15_2402 at 2536.207 kb on - strand, within HP15_2402 at 2536.307 kb on + strand, within HP15_2402 at 2536.323 kb on - strand, within HP15_2402 at 2536.340 kb on + strand, within HP15_2402 at 2536.489 kb on + strand, within HP15_2402 at 2536.496 kb on - strand, within HP15_2402
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 2,532,136 + HP15_2400 0.11 -1.4 2,532,173 + HP15_2400 0.15 -2.6 2,532,173 + HP15_2400 0.15 -4.7 2,532,269 - HP15_2400 0.25 -2.3 2,532,534 + HP15_2400 0.52 -4.1 2,532,534 + HP15_2400 0.52 -3.3 2,532,604 + HP15_2400 0.59 -1.5 2,532,631 - HP15_2400 0.62 -3.1 2,532,666 + HP15_2400 0.66 -2.1 2,532,795 + HP15_2400 0.79 -4.5 2,532,803 - HP15_2400 0.80 -3.9 2,532,805 + HP15_2400 0.80 -1.7 2,532,926 + -1.7 2,532,954 - +1.4 2,533,041 + -1.9 2,533,051 + -5.6 2,533,219 + -5.2 2,533,317 - HP15_2401 0.13 -4.2 2,533,441 - HP15_2401 0.18 -2.7 2,533,660 + HP15_2401 0.26 -2.6 2,533,680 - HP15_2401 0.27 -2.9 2,533,692 + HP15_2401 0.27 -3.8 2,533,749 + HP15_2401 0.30 -2.5 2,533,766 + HP15_2401 0.30 -6.7 2,534,255 - HP15_2401 0.50 -3.6 2,534,291 + HP15_2401 0.51 -0.1 2,534,404 + HP15_2401 0.56 -3.4 2,534,482 - HP15_2401 0.59 -2.1 2,534,556 + HP15_2401 0.62 -1.1 2,534,563 + HP15_2401 0.62 -6.5 2,534,564 - HP15_2401 0.62 -1.8 2,534,570 + HP15_2401 0.62 -4.2 2,534,571 - HP15_2401 0.62 -2.8 2,534,599 + HP15_2401 0.63 -2.9 2,534,733 + HP15_2401 0.68 -4.3 2,534,741 - HP15_2401 0.69 -1.6 2,534,755 + HP15_2401 0.69 -2.3 2,534,755 + HP15_2401 0.69 -1.4 2,534,755 + HP15_2401 0.69 -3.3 2,534,755 + HP15_2401 0.69 -2.9 2,534,861 + HP15_2401 0.74 -0.9 2,534,870 + HP15_2401 0.74 -5.1 2,534,878 - HP15_2401 0.74 -3.2 2,534,938 + HP15_2401 0.77 -5.6 2,534,943 + HP15_2401 0.77 -2.0 2,535,011 + HP15_2401 0.79 -5.2 2,535,011 + HP15_2401 0.79 -2.9 2,535,175 + HP15_2401 0.86 -3.1 2,535,361 + -4.4 2,535,388 - -3.3 2,535,390 + -5.8 2,535,423 + -3.6 2,535,423 + -3.5 2,535,431 - -3.9 2,535,431 - -3.6 2,535,477 - -2.9 2,535,480 - -4.0 2,535,480 - -0.9 2,535,491 + -2.1 2,535,759 + HP15_2402 0.14 -4.9 2,535,764 + HP15_2402 0.15 -2.3 2,535,767 - HP15_2402 0.15 -0.6 2,535,800 - HP15_2402 0.17 +0.1 2,535,899 - HP15_2402 0.25 -0.9 2,535,921 + HP15_2402 0.26 -2.0 2,536,033 + HP15_2402 0.35 -0.5 2,536,052 + HP15_2402 0.36 -2.2 2,536,052 + HP15_2402 0.36 -4.7 2,536,150 - HP15_2402 0.44 +0.2 2,536,207 - HP15_2402 0.48 -2.3 2,536,307 + HP15_2402 0.55 -0.9 2,536,323 - HP15_2402 0.56 -1.6 2,536,340 + HP15_2402 0.58 -1.4 2,536,489 + HP15_2402 0.69 -4.0 2,536,496 - HP15_2402 0.69 -1.6
Or see this region's nucleotide sequence