Strain Fitness in Marinobacter adhaerens HP15 around HP15_2401

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2400 and HP15_2401 overlap by 1 nucleotidesHP15_2401 and HP15_2402 are separated by 32 nucleotides HP15_2400: HP15_2400 - lipopolysaccharide biosynthesis protein, at 2,532,030 to 2,532,995 _2400 HP15_2401: HP15_2401 - polysaccharide biosynthesis/export protein, at 2,532,995 to 2,535,532 _2401 HP15_2402: HP15_2402 - conserved hypothetical protein, at 2,535,565 to 2,536,908 _2402 Position (kb) 2532 2533 2534 2535 2536Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2532.136 kb on + strand, within HP15_2400at 2532.173 kb on + strand, within HP15_2400at 2532.173 kb on + strand, within HP15_2400at 2532.269 kb on - strand, within HP15_2400at 2532.534 kb on + strand, within HP15_2400at 2532.534 kb on + strand, within HP15_2400at 2532.604 kb on + strand, within HP15_2400at 2532.631 kb on - strand, within HP15_2400at 2532.666 kb on + strand, within HP15_2400at 2532.795 kb on + strand, within HP15_2400at 2532.803 kb on - strand, within HP15_2400at 2532.805 kb on + strand, within HP15_2400at 2532.926 kb on + strandat 2532.954 kb on - strandat 2533.041 kb on + strandat 2533.051 kb on + strandat 2533.219 kb on + strandat 2533.317 kb on - strand, within HP15_2401at 2533.441 kb on - strand, within HP15_2401at 2533.660 kb on + strand, within HP15_2401at 2533.680 kb on - strand, within HP15_2401at 2533.692 kb on + strand, within HP15_2401at 2533.749 kb on + strand, within HP15_2401at 2533.766 kb on + strand, within HP15_2401at 2534.255 kb on - strand, within HP15_2401at 2534.291 kb on + strand, within HP15_2401at 2534.404 kb on + strand, within HP15_2401at 2534.482 kb on - strand, within HP15_2401at 2534.556 kb on + strand, within HP15_2401at 2534.563 kb on + strand, within HP15_2401at 2534.564 kb on - strand, within HP15_2401at 2534.570 kb on + strand, within HP15_2401at 2534.571 kb on - strand, within HP15_2401at 2534.599 kb on + strand, within HP15_2401at 2534.733 kb on + strand, within HP15_2401at 2534.741 kb on - strand, within HP15_2401at 2534.755 kb on + strand, within HP15_2401at 2534.755 kb on + strand, within HP15_2401at 2534.755 kb on + strand, within HP15_2401at 2534.755 kb on + strand, within HP15_2401at 2534.861 kb on + strand, within HP15_2401at 2534.870 kb on + strand, within HP15_2401at 2534.878 kb on - strand, within HP15_2401at 2534.938 kb on + strand, within HP15_2401at 2534.943 kb on + strand, within HP15_2401at 2535.011 kb on + strand, within HP15_2401at 2535.011 kb on + strand, within HP15_2401at 2535.175 kb on + strand, within HP15_2401at 2535.361 kb on + strandat 2535.388 kb on - strandat 2535.390 kb on + strandat 2535.423 kb on + strandat 2535.423 kb on + strandat 2535.431 kb on - strandat 2535.431 kb on - strandat 2535.477 kb on - strandat 2535.480 kb on - strandat 2535.480 kb on - strandat 2535.491 kb on + strandat 2535.759 kb on + strand, within HP15_2402at 2535.764 kb on + strand, within HP15_2402at 2535.767 kb on - strand, within HP15_2402at 2535.800 kb on - strand, within HP15_2402at 2535.899 kb on - strand, within HP15_2402at 2535.921 kb on + strand, within HP15_2402at 2536.033 kb on + strand, within HP15_2402at 2536.052 kb on + strand, within HP15_2402at 2536.052 kb on + strand, within HP15_2402at 2536.150 kb on - strand, within HP15_2402at 2536.207 kb on - strand, within HP15_2402at 2536.307 kb on + strand, within HP15_2402at 2536.323 kb on - strand, within HP15_2402at 2536.340 kb on + strand, within HP15_2402at 2536.489 kb on + strand, within HP15_2402at 2536.496 kb on - strand, within HP15_2402

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,532,136 + HP15_2400 0.11 -1.4
2,532,173 + HP15_2400 0.15 -2.6
2,532,173 + HP15_2400 0.15 -4.7
2,532,269 - HP15_2400 0.25 -2.3
2,532,534 + HP15_2400 0.52 -4.1
2,532,534 + HP15_2400 0.52 -3.3
2,532,604 + HP15_2400 0.59 -1.5
2,532,631 - HP15_2400 0.62 -3.1
2,532,666 + HP15_2400 0.66 -2.1
2,532,795 + HP15_2400 0.79 -4.5
2,532,803 - HP15_2400 0.80 -3.9
2,532,805 + HP15_2400 0.80 -1.7
2,532,926 + -1.7
2,532,954 - +1.4
2,533,041 + -1.9
2,533,051 + -5.6
2,533,219 + -5.2
2,533,317 - HP15_2401 0.13 -4.2
2,533,441 - HP15_2401 0.18 -2.7
2,533,660 + HP15_2401 0.26 -2.6
2,533,680 - HP15_2401 0.27 -2.9
2,533,692 + HP15_2401 0.27 -3.8
2,533,749 + HP15_2401 0.30 -2.5
2,533,766 + HP15_2401 0.30 -6.7
2,534,255 - HP15_2401 0.50 -3.6
2,534,291 + HP15_2401 0.51 -0.1
2,534,404 + HP15_2401 0.56 -3.4
2,534,482 - HP15_2401 0.59 -2.1
2,534,556 + HP15_2401 0.62 -1.1
2,534,563 + HP15_2401 0.62 -6.5
2,534,564 - HP15_2401 0.62 -1.8
2,534,570 + HP15_2401 0.62 -4.2
2,534,571 - HP15_2401 0.62 -2.8
2,534,599 + HP15_2401 0.63 -2.9
2,534,733 + HP15_2401 0.68 -4.3
2,534,741 - HP15_2401 0.69 -1.6
2,534,755 + HP15_2401 0.69 -2.3
2,534,755 + HP15_2401 0.69 -1.4
2,534,755 + HP15_2401 0.69 -3.3
2,534,755 + HP15_2401 0.69 -2.9
2,534,861 + HP15_2401 0.74 -0.9
2,534,870 + HP15_2401 0.74 -5.1
2,534,878 - HP15_2401 0.74 -3.2
2,534,938 + HP15_2401 0.77 -5.6
2,534,943 + HP15_2401 0.77 -2.0
2,535,011 + HP15_2401 0.79 -5.2
2,535,011 + HP15_2401 0.79 -2.9
2,535,175 + HP15_2401 0.86 -3.1
2,535,361 + -4.4
2,535,388 - -3.3
2,535,390 + -5.8
2,535,423 + -3.6
2,535,423 + -3.5
2,535,431 - -3.9
2,535,431 - -3.6
2,535,477 - -2.9
2,535,480 - -4.0
2,535,480 - -0.9
2,535,491 + -2.1
2,535,759 + HP15_2402 0.14 -4.9
2,535,764 + HP15_2402 0.15 -2.3
2,535,767 - HP15_2402 0.15 -0.6
2,535,800 - HP15_2402 0.17 +0.1
2,535,899 - HP15_2402 0.25 -0.9
2,535,921 + HP15_2402 0.26 -2.0
2,536,033 + HP15_2402 0.35 -0.5
2,536,052 + HP15_2402 0.36 -2.2
2,536,052 + HP15_2402 0.36 -4.7
2,536,150 - HP15_2402 0.44 +0.2
2,536,207 - HP15_2402 0.48 -2.3
2,536,307 + HP15_2402 0.55 -0.9
2,536,323 - HP15_2402 0.56 -1.6
2,536,340 + HP15_2402 0.58 -1.4
2,536,489 + HP15_2402 0.69 -4.0
2,536,496 - HP15_2402 0.69 -1.6

Or see this region's nucleotide sequence