Strain Fitness in Marinobacter adhaerens HP15 around HP15_2200

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2199 and HP15_2200 are separated by 159 nucleotidesHP15_2200 and HP15_2201 are separated by 145 nucleotides HP15_2199: HP15_2199 - glucose/sorbosone dehydrogenase, at 2,316,005 to 2,317,540 _2199 HP15_2200: HP15_2200 - oxidoreductase FAD/NAD(P)-binding domain protein, at 2,317,700 to 2,318,470 _2200 HP15_2201: HP15_2201 - transcriptional regulator, LysR family, at 2,318,616 to 2,319,499 _2201 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -3 -2 -1 0 1at 2316.750 kb on - strand, within HP15_2199at 2316.828 kb on + strand, within HP15_2199at 2316.845 kb on + strand, within HP15_2199at 2316.863 kb on - strand, within HP15_2199at 2316.916 kb on + strand, within HP15_2199at 2317.005 kb on - strand, within HP15_2199at 2317.026 kb on + strand, within HP15_2199at 2317.041 kb on + strand, within HP15_2199at 2317.041 kb on + strand, within HP15_2199at 2317.059 kb on - strand, within HP15_2199at 2317.107 kb on + strand, within HP15_2199at 2317.214 kb on - strand, within HP15_2199at 2317.256 kb on + strand, within HP15_2199at 2317.392 kb on + strandat 2317.472 kb on - strandat 2317.511 kb on + strandat 2317.516 kb on + strandat 2317.627 kb on - strandat 2317.664 kb on - strandat 2317.793 kb on - strand, within HP15_2200at 2318.260 kb on - strand, within HP15_2200at 2318.328 kb on + strand, within HP15_2200at 2318.400 kb on + strandat 2318.414 kb on - strandat 2318.543 kb on - strandat 2318.543 kb on - strandat 2318.545 kb on + strandat 2318.796 kb on - strand, within HP15_2201at 2318.851 kb on + strand, within HP15_2201at 2318.864 kb on - strand, within HP15_2201at 2318.898 kb on + strand, within HP15_2201at 2318.902 kb on + strand, within HP15_2201at 2318.962 kb on + strand, within HP15_2201at 2318.967 kb on + strand, within HP15_2201at 2318.970 kb on - strand, within HP15_2201at 2318.971 kb on + strand, within HP15_2201at 2319.001 kb on - strand, within HP15_2201at 2319.070 kb on + strand, within HP15_2201at 2319.070 kb on + strand, within HP15_2201at 2319.078 kb on - strand, within HP15_2201at 2319.119 kb on - strand, within HP15_2201at 2319.170 kb on - strand, within HP15_2201at 2319.241 kb on - strand, within HP15_2201at 2319.277 kb on + strand, within HP15_2201at 2319.305 kb on + strand, within HP15_2201

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,316,750 - HP15_2199 0.49 -0.2
2,316,828 + HP15_2199 0.54 -0.0
2,316,845 + HP15_2199 0.55 +0.1
2,316,863 - HP15_2199 0.56 -0.4
2,316,916 + HP15_2199 0.59 -0.5
2,317,005 - HP15_2199 0.65 -3.1
2,317,026 + HP15_2199 0.66 +1.2
2,317,041 + HP15_2199 0.67 -0.5
2,317,041 + HP15_2199 0.67 -0.4
2,317,059 - HP15_2199 0.69 -0.7
2,317,107 + HP15_2199 0.72 -0.3
2,317,214 - HP15_2199 0.79 -0.2
2,317,256 + HP15_2199 0.81 +1.4
2,317,392 + -0.9
2,317,472 - -0.4
2,317,511 + +0.2
2,317,516 + -0.1
2,317,627 - +0.4
2,317,664 - +0.3
2,317,793 - HP15_2200 0.12 -1.3
2,318,260 - HP15_2200 0.73 -1.4
2,318,328 + HP15_2200 0.81 -1.6
2,318,400 + -1.6
2,318,414 - -1.2
2,318,543 - -0.8
2,318,543 - +0.2
2,318,545 + -0.7
2,318,796 - HP15_2201 0.20 -0.4
2,318,851 + HP15_2201 0.27 -0.1
2,318,864 - HP15_2201 0.28 +0.4
2,318,898 + HP15_2201 0.32 -0.2
2,318,902 + HP15_2201 0.32 +0.5
2,318,962 + HP15_2201 0.39 -0.6
2,318,967 + HP15_2201 0.40 -0.2
2,318,970 - HP15_2201 0.40 +0.3
2,318,971 + HP15_2201 0.40 -0.2
2,319,001 - HP15_2201 0.44 -1.2
2,319,070 + HP15_2201 0.51 +0.7
2,319,070 + HP15_2201 0.51 -0.3
2,319,078 - HP15_2201 0.52 -0.1
2,319,119 - HP15_2201 0.57 +0.6
2,319,170 - HP15_2201 0.63 +0.7
2,319,241 - HP15_2201 0.71 +0.7
2,319,277 + HP15_2201 0.75 +0.7
2,319,305 + HP15_2201 0.78 -0.0

Or see this region's nucleotide sequence