Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2199 and HP15_2200 are separated by 159 nucleotides HP15_2200 and HP15_2201 are separated by 145 nucleotides
HP15_2199: HP15_2199 - glucose/sorbosone dehydrogenase, at 2,316,005 to 2,317,540
_2199
HP15_2200: HP15_2200 - oxidoreductase FAD/NAD(P)-binding domain protein, at 2,317,700 to 2,318,470
_2200
HP15_2201: HP15_2201 - transcriptional regulator, LysR family, at 2,318,616 to 2,319,499
_2201
Position (kb)
2317
2318
2319 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2316.750 kb on - strand, within HP15_2199 at 2316.828 kb on + strand, within HP15_2199 at 2316.845 kb on + strand, within HP15_2199 at 2316.863 kb on - strand, within HP15_2199 at 2316.916 kb on + strand, within HP15_2199 at 2317.005 kb on - strand, within HP15_2199 at 2317.026 kb on + strand, within HP15_2199 at 2317.041 kb on + strand, within HP15_2199 at 2317.041 kb on + strand, within HP15_2199 at 2317.059 kb on - strand, within HP15_2199 at 2317.107 kb on + strand, within HP15_2199 at 2317.214 kb on - strand, within HP15_2199 at 2317.256 kb on + strand, within HP15_2199 at 2317.392 kb on + strand at 2317.472 kb on - strand at 2317.511 kb on + strand at 2317.516 kb on + strand at 2317.627 kb on - strand at 2317.664 kb on - strand at 2317.793 kb on - strand, within HP15_2200 at 2318.260 kb on - strand, within HP15_2200 at 2318.328 kb on + strand, within HP15_2200 at 2318.400 kb on + strand at 2318.414 kb on - strand at 2318.543 kb on - strand at 2318.543 kb on - strand at 2318.545 kb on + strand at 2318.796 kb on - strand, within HP15_2201 at 2318.851 kb on + strand, within HP15_2201 at 2318.864 kb on - strand, within HP15_2201 at 2318.898 kb on + strand, within HP15_2201 at 2318.902 kb on + strand, within HP15_2201 at 2318.962 kb on + strand, within HP15_2201 at 2318.967 kb on + strand, within HP15_2201 at 2318.970 kb on - strand, within HP15_2201 at 2318.971 kb on + strand, within HP15_2201 at 2319.001 kb on - strand, within HP15_2201 at 2319.070 kb on + strand, within HP15_2201 at 2319.070 kb on + strand, within HP15_2201 at 2319.078 kb on - strand, within HP15_2201 at 2319.119 kb on - strand, within HP15_2201 at 2319.170 kb on - strand, within HP15_2201 at 2319.241 kb on - strand, within HP15_2201 at 2319.277 kb on + strand, within HP15_2201 at 2319.305 kb on + strand, within HP15_2201
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 2,316,750 - HP15_2199 0.49 -0.2 2,316,828 + HP15_2199 0.54 -0.0 2,316,845 + HP15_2199 0.55 +0.1 2,316,863 - HP15_2199 0.56 -0.4 2,316,916 + HP15_2199 0.59 -0.5 2,317,005 - HP15_2199 0.65 -3.1 2,317,026 + HP15_2199 0.66 +1.2 2,317,041 + HP15_2199 0.67 -0.5 2,317,041 + HP15_2199 0.67 -0.4 2,317,059 - HP15_2199 0.69 -0.7 2,317,107 + HP15_2199 0.72 -0.3 2,317,214 - HP15_2199 0.79 -0.2 2,317,256 + HP15_2199 0.81 +1.4 2,317,392 + -0.9 2,317,472 - -0.4 2,317,511 + +0.2 2,317,516 + -0.1 2,317,627 - +0.4 2,317,664 - +0.3 2,317,793 - HP15_2200 0.12 -1.3 2,318,260 - HP15_2200 0.73 -1.4 2,318,328 + HP15_2200 0.81 -1.6 2,318,400 + -1.6 2,318,414 - -1.2 2,318,543 - -0.8 2,318,543 - +0.2 2,318,545 + -0.7 2,318,796 - HP15_2201 0.20 -0.4 2,318,851 + HP15_2201 0.27 -0.1 2,318,864 - HP15_2201 0.28 +0.4 2,318,898 + HP15_2201 0.32 -0.2 2,318,902 + HP15_2201 0.32 +0.5 2,318,962 + HP15_2201 0.39 -0.6 2,318,967 + HP15_2201 0.40 -0.2 2,318,970 - HP15_2201 0.40 +0.3 2,318,971 + HP15_2201 0.40 -0.2 2,319,001 - HP15_2201 0.44 -1.2 2,319,070 + HP15_2201 0.51 +0.7 2,319,070 + HP15_2201 0.51 -0.3 2,319,078 - HP15_2201 0.52 -0.1 2,319,119 - HP15_2201 0.57 +0.6 2,319,170 - HP15_2201 0.63 +0.7 2,319,241 - HP15_2201 0.71 +0.7 2,319,277 + HP15_2201 0.75 +0.7 2,319,305 + HP15_2201 0.78 -0.0
Or see this region's nucleotide sequence