Strain Fitness in Marinobacter adhaerens HP15 around HP15_2160

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2158 and HP15_2159 are separated by 117 nucleotidesHP15_2159 and HP15_2160 overlap by 4 nucleotidesHP15_2160 and HP15_2161 are separated by 11 nucleotidesHP15_2161 and HP15_2162 are separated by 7 nucleotides HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246 _2158 HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471 _2159 HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743 _2160 HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564 _2161 HP15_2162: HP15_2162 - sugar ABC transporter, permease protein, at 2,268,572 to 2,269,438 _2162 Position (kb) 2267 2268Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2266.529 kb on + strand, within HP15_2158at 2266.542 kb on + strand, within HP15_2158at 2266.580 kb on - strand, within HP15_2158at 2266.585 kb on + strand, within HP15_2158at 2266.597 kb on + strand, within HP15_2158at 2266.606 kb on + strand, within HP15_2158at 2266.657 kb on + strand, within HP15_2158at 2266.721 kb on + strand, within HP15_2158at 2266.721 kb on + strand, within HP15_2158at 2266.814 kb on - strand, within HP15_2158at 2266.838 kb on + strand, within HP15_2158at 2267.089 kb on + strandat 2267.097 kb on - strandat 2267.119 kb on + strandat 2267.161 kb on + strandat 2267.210 kb on + strandat 2267.247 kb on + strandat 2267.571 kb on + strand, within HP15_2160at 2267.640 kb on + strand, within HP15_2160at 2267.695 kb on + strand, within HP15_2160at 2267.764 kb on + strandat 2267.801 kb on + strandat 2267.877 kb on + strand, within HP15_2161at 2267.954 kb on + strand, within HP15_2161at 2268.119 kb on + strand, within HP15_2161at 2268.272 kb on + strand, within HP15_2161at 2268.399 kb on - strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.438 kb on + strand, within HP15_2161at 2268.446 kb on - strand, within HP15_2161at 2268.446 kb on - strand, within HP15_2161

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,266,529 + HP15_2158 0.59 -0.3
2,266,542 + HP15_2158 0.60 +0.2
2,266,580 - HP15_2158 0.62 +0.4
2,266,585 + HP15_2158 0.62 +0.2
2,266,597 + HP15_2158 0.63 +0.6
2,266,606 + HP15_2158 0.63 +0.4
2,266,657 + HP15_2158 0.66 -0.4
2,266,721 + HP15_2158 0.70 -0.0
2,266,721 + HP15_2158 0.70 -0.1
2,266,814 - HP15_2158 0.75 -0.3
2,266,838 + HP15_2158 0.77 +0.6
2,267,089 + -0.3
2,267,097 - -2.1
2,267,119 + +0.6
2,267,161 + +0.2
2,267,210 + -0.1
2,267,247 + +0.1
2,267,571 + HP15_2160 0.37 +0.3
2,267,640 + HP15_2160 0.62 -1.0
2,267,695 + HP15_2160 0.82 -0.3
2,267,764 + -0.5
2,267,801 + -0.1
2,267,877 + HP15_2161 0.15 +1.2
2,267,954 + HP15_2161 0.25 +0.2
2,268,119 + HP15_2161 0.45 -0.4
2,268,272 + HP15_2161 0.64 +0.6
2,268,399 - HP15_2161 0.80 +3.5
2,268,438 + HP15_2161 0.84 +0.2
2,268,438 + HP15_2161 0.84 -0.8
2,268,438 + HP15_2161 0.84 -0.2
2,268,438 + HP15_2161 0.84 +0.7
2,268,446 - HP15_2161 0.85 +0.5
2,268,446 - HP15_2161 0.85 -0.4

Or see this region's nucleotide sequence