Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2158 and HP15_2159 are separated by 117 nucleotides HP15_2159 and HP15_2160 overlap by 4 nucleotides HP15_2160 and HP15_2161 are separated by 11 nucleotides HP15_2161 and HP15_2162 are separated by 7 nucleotides
HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246
_2158
HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471
_2159
HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743
_2160
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
HP15_2162: HP15_2162 - sugar ABC transporter, permease protein, at 2,268,572 to 2,269,438
_2162
Position (kb)
2267
2268 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2266.529 kb on + strand, within HP15_2158 at 2266.542 kb on + strand, within HP15_2158 at 2266.580 kb on - strand, within HP15_2158 at 2266.585 kb on + strand, within HP15_2158 at 2266.597 kb on + strand, within HP15_2158 at 2266.606 kb on + strand, within HP15_2158 at 2266.657 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.814 kb on - strand, within HP15_2158 at 2266.838 kb on + strand, within HP15_2158 at 2267.089 kb on + strand at 2267.097 kb on - strand at 2267.119 kb on + strand at 2267.161 kb on + strand at 2267.210 kb on + strand at 2267.247 kb on + strand at 2267.571 kb on + strand, within HP15_2160 at 2267.640 kb on + strand, within HP15_2160 at 2267.695 kb on + strand, within HP15_2160 at 2267.764 kb on + strand at 2267.801 kb on + strand at 2267.877 kb on + strand, within HP15_2161 at 2267.954 kb on + strand, within HP15_2161 at 2268.119 kb on + strand, within HP15_2161 at 2268.272 kb on + strand, within HP15_2161 at 2268.399 kb on - strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 2,266,529 + HP15_2158 0.59 -0.3 2,266,542 + HP15_2158 0.60 +0.2 2,266,580 - HP15_2158 0.62 +0.4 2,266,585 + HP15_2158 0.62 +0.2 2,266,597 + HP15_2158 0.63 +0.6 2,266,606 + HP15_2158 0.63 +0.4 2,266,657 + HP15_2158 0.66 -0.4 2,266,721 + HP15_2158 0.70 -0.0 2,266,721 + HP15_2158 0.70 -0.1 2,266,814 - HP15_2158 0.75 -0.3 2,266,838 + HP15_2158 0.77 +0.6 2,267,089 + -0.3 2,267,097 - -2.1 2,267,119 + +0.6 2,267,161 + +0.2 2,267,210 + -0.1 2,267,247 + +0.1 2,267,571 + HP15_2160 0.37 +0.3 2,267,640 + HP15_2160 0.62 -1.0 2,267,695 + HP15_2160 0.82 -0.3 2,267,764 + -0.5 2,267,801 + -0.1 2,267,877 + HP15_2161 0.15 +1.2 2,267,954 + HP15_2161 0.25 +0.2 2,268,119 + HP15_2161 0.45 -0.4 2,268,272 + HP15_2161 0.64 +0.6 2,268,399 - HP15_2161 0.80 +3.5 2,268,438 + HP15_2161 0.84 +0.2 2,268,438 + HP15_2161 0.84 -0.8 2,268,438 + HP15_2161 0.84 -0.2 2,268,438 + HP15_2161 0.84 +0.7 2,268,446 - HP15_2161 0.85 +0.5 2,268,446 - HP15_2161 0.85 -0.4
Or see this region's nucleotide sequence