Strain Fitness in Marinobacter adhaerens HP15 around HP15_2019

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2017 and HP15_2018 overlap by 14 nucleotidesHP15_2018 and HP15_2019 are separated by 9 nucleotidesHP15_2019 and HP15_2020 are separated by 33 nucleotides HP15_2017: HP15_2017 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,118,142 to 2,118,945 _2017 HP15_2018: HP15_2018 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,118,932 to 2,119,588 _2018 HP15_2019: HP15_2019 - iron-containing alcohol dehydrogenase, at 2,119,598 to 2,120,755 _2019 HP15_2020: HP15_2020 - succinate-semialdehyde dehydrogenase I, at 2,120,789 to 2,122,258 _2020 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -2 -1 0 1at 2118.601 kb on + strand, within HP15_2017at 2118.726 kb on - strand, within HP15_2017at 2118.774 kb on + strand, within HP15_2017at 2118.774 kb on + strand, within HP15_2017at 2118.782 kb on - strand, within HP15_2017at 2118.808 kb on + strand, within HP15_2017at 2118.833 kb on + strand, within HP15_2017at 2119.041 kb on + strand, within HP15_2018at 2119.232 kb on + strand, within HP15_2018at 2119.330 kb on - strand, within HP15_2018at 2119.358 kb on + strand, within HP15_2018at 2119.366 kb on - strand, within HP15_2018at 2119.366 kb on - strand, within HP15_2018at 2119.366 kb on - strand, within HP15_2018at 2119.417 kb on - strand, within HP15_2018at 2119.495 kb on - strand, within HP15_2018at 2119.503 kb on - strand, within HP15_2018at 2119.523 kb on + strandat 2119.843 kb on - strand, within HP15_2019at 2119.970 kb on - strand, within HP15_2019at 2119.972 kb on + strand, within HP15_2019at 2119.985 kb on + strand, within HP15_2019at 2120.248 kb on - strand, within HP15_2019at 2120.250 kb on + strand, within HP15_2019at 2120.332 kb on + strand, within HP15_2019at 2120.332 kb on + strand, within HP15_2019at 2120.482 kb on + strand, within HP15_2019at 2120.585 kb on - strand, within HP15_2019at 2120.610 kb on + strand, within HP15_2019at 2120.649 kb on - strandat 2120.701 kb on + strandat 2120.703 kb on + strandat 2120.824 kb on - strandat 2120.838 kb on - strandat 2120.867 kb on + strandat 2120.953 kb on + strand, within HP15_2020at 2121.076 kb on - strand, within HP15_2020at 2121.088 kb on + strand, within HP15_2020at 2121.096 kb on - strand, within HP15_2020at 2121.160 kb on + strand, within HP15_2020at 2121.160 kb on + strand, within HP15_2020at 2121.168 kb on - strand, within HP15_2020at 2121.170 kb on + strand, within HP15_2020at 2121.257 kb on + strand, within HP15_2020at 2121.323 kb on + strand, within HP15_2020at 2121.336 kb on - strand, within HP15_2020at 2121.461 kb on - strand, within HP15_2020at 2121.501 kb on + strand, within HP15_2020at 2121.649 kb on + strand, within HP15_2020at 2121.659 kb on + strand, within HP15_2020at 2121.667 kb on - strand, within HP15_2020at 2121.701 kb on + strand, within HP15_2020at 2121.735 kb on - strand, within HP15_2020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,118,601 + HP15_2017 0.57 -0.2
2,118,726 - HP15_2017 0.73 +0.5
2,118,774 + HP15_2017 0.79 -0.6
2,118,774 + HP15_2017 0.79 -0.1
2,118,782 - HP15_2017 0.80 -0.2
2,118,808 + HP15_2017 0.83 +0.3
2,118,833 + HP15_2017 0.86 -0.0
2,119,041 + HP15_2018 0.17 -1.8
2,119,232 + HP15_2018 0.46 -0.9
2,119,330 - HP15_2018 0.61 +0.2
2,119,358 + HP15_2018 0.65 +0.9
2,119,366 - HP15_2018 0.66 -0.2
2,119,366 - HP15_2018 0.66 +0.9
2,119,366 - HP15_2018 0.66 -1.3
2,119,417 - HP15_2018 0.74 -0.3
2,119,495 - HP15_2018 0.86 -0.9
2,119,503 - HP15_2018 0.87 -0.3
2,119,523 + +1.2
2,119,843 - HP15_2019 0.21 +0.5
2,119,970 - HP15_2019 0.32 -0.4
2,119,972 + HP15_2019 0.32 -0.7
2,119,985 + HP15_2019 0.33 +0.8
2,120,248 - HP15_2019 0.56 -0.5
2,120,250 + HP15_2019 0.56 +0.1
2,120,332 + HP15_2019 0.63 -0.5
2,120,332 + HP15_2019 0.63 +0.5
2,120,482 + HP15_2019 0.76 +0.5
2,120,585 - HP15_2019 0.85 +1.2
2,120,610 + HP15_2019 0.87 +0.6
2,120,649 - -0.3
2,120,701 + +0.2
2,120,703 + +1.2
2,120,824 - -0.4
2,120,838 - -0.5
2,120,867 + -0.2
2,120,953 + HP15_2020 0.11 -0.3
2,121,076 - HP15_2020 0.20 +0.0
2,121,088 + HP15_2020 0.20 -0.9
2,121,096 - HP15_2020 0.21 -0.6
2,121,160 + HP15_2020 0.25 -0.5
2,121,160 + HP15_2020 0.25 +0.3
2,121,168 - HP15_2020 0.26 +0.1
2,121,170 + HP15_2020 0.26 +0.8
2,121,257 + HP15_2020 0.32 +0.8
2,121,323 + HP15_2020 0.36 -0.4
2,121,336 - HP15_2020 0.37 -0.5
2,121,461 - HP15_2020 0.46 -0.0
2,121,501 + HP15_2020 0.48 +0.6
2,121,649 + HP15_2020 0.59 -0.0
2,121,659 + HP15_2020 0.59 +0.4
2,121,667 - HP15_2020 0.60 +0.7
2,121,701 + HP15_2020 0.62 -0.1
2,121,735 - HP15_2020 0.64 -0.1

Or see this region's nucleotide sequence