Strain Fitness in Marinobacter adhaerens HP15 around HP15_1973

Experiment: L-Isoleucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1972 and HP15_1973 overlap by 11 nucleotidesHP15_1973 and HP15_1974 are separated by 1 nucleotidesHP15_1974 and HP15_1975 overlap by 4 nucleotidesHP15_1975 and HP15_1976 are separated by 107 nucleotides HP15_1972: HP15_1972 - fibronectin, type III domain protein-like protein, at 2,089,769 to 2,090,875 _1972 HP15_1973: HP15_1973 - hypothetical protein, at 2,090,865 to 2,090,984 _1973 HP15_1974: HP15_1974 - hypothetical protein, at 2,090,986 to 2,091,447 _1974 HP15_1975: HP15_1975 - conserved hypothetical protein, at 2,091,444 to 2,091,581 _1975 HP15_1976: HP15_1976 - hypothetical protein, at 2,091,689 to 2,092,069 _1976 Position (kb) 2090 2091Strain fitness (log2 ratio) -2 -1 0 1at 2089.885 kb on + strand, within HP15_1972at 2089.893 kb on - strand, within HP15_1972at 2089.893 kb on - strand, within HP15_1972at 2089.968 kb on + strand, within HP15_1972at 2090.083 kb on + strand, within HP15_1972at 2090.083 kb on + strand, within HP15_1972at 2090.083 kb on + strand, within HP15_1972at 2090.091 kb on - strand, within HP15_1972at 2090.091 kb on - strand, within HP15_1972at 2090.124 kb on - strand, within HP15_1972at 2090.344 kb on + strand, within HP15_1972at 2090.362 kb on - strand, within HP15_1972at 2090.559 kb on - strand, within HP15_1972at 2090.573 kb on + strand, within HP15_1972at 2090.695 kb on - strand, within HP15_1972at 2090.775 kb on + strandat 2090.777 kb on + strandat 2090.783 kb on - strandat 2090.783 kb on - strandat 2090.783 kb on - strandat 2090.809 kb on - strandat 2090.828 kb on - strandat 2090.931 kb on - strand, within HP15_1973at 2090.958 kb on + strand, within HP15_1973at 2091.104 kb on + strand, within HP15_1974at 2091.241 kb on - strand, within HP15_1974at 2091.252 kb on + strand, within HP15_1974at 2091.463 kb on + strand, within HP15_1975at 2091.471 kb on - strand, within HP15_1975at 2091.615 kb on + strandat 2091.660 kb on + strandat 2091.665 kb on + strandat 2091.673 kb on - strandat 2091.738 kb on + strand, within HP15_1976at 2091.738 kb on + strand, within HP15_1976at 2091.738 kb on + strand, within HP15_1976at 2091.787 kb on + strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.795 kb on - strand, within HP15_1976at 2091.807 kb on + strand, within HP15_1976at 2091.975 kb on + strand, within HP15_1976at 2091.975 kb on + strand, within HP15_1976at 2091.975 kb on + strand, within HP15_1976at 2091.976 kb on - strand, within HP15_1976at 2091.983 kb on - strand, within HP15_1976

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
remove
2,089,885 + HP15_1972 0.10 +0.5
2,089,893 - HP15_1972 0.11 -0.6
2,089,893 - HP15_1972 0.11 +0.7
2,089,968 + HP15_1972 0.18 +0.0
2,090,083 + HP15_1972 0.28 +0.0
2,090,083 + HP15_1972 0.28 -0.4
2,090,083 + HP15_1972 0.28 -0.8
2,090,091 - HP15_1972 0.29 +0.5
2,090,091 - HP15_1972 0.29 +0.9
2,090,124 - HP15_1972 0.32 +0.5
2,090,344 + HP15_1972 0.52 +0.1
2,090,362 - HP15_1972 0.54 +0.9
2,090,559 - HP15_1972 0.71 -0.3
2,090,573 + HP15_1972 0.73 +0.4
2,090,695 - HP15_1972 0.84 -0.4
2,090,775 + -2.5
2,090,777 + +0.7
2,090,783 - -0.0
2,090,783 - -0.2
2,090,783 - +0.5
2,090,809 - +0.8
2,090,828 - +0.3
2,090,931 - HP15_1973 0.55 -0.6
2,090,958 + HP15_1973 0.78 +0.2
2,091,104 + HP15_1974 0.26 -1.3
2,091,241 - HP15_1974 0.55 +0.4
2,091,252 + HP15_1974 0.58 +0.4
2,091,463 + HP15_1975 0.14 -1.2
2,091,471 - HP15_1975 0.20 +0.5
2,091,615 + +1.3
2,091,660 + +1.4
2,091,665 + -0.4
2,091,673 - +1.0
2,091,738 + HP15_1976 0.13 +0.4
2,091,738 + HP15_1976 0.13 -0.2
2,091,738 + HP15_1976 0.13 +0.2
2,091,787 + HP15_1976 0.26 +0.5
2,091,795 - HP15_1976 0.28 +0.8
2,091,795 - HP15_1976 0.28 +1.2
2,091,795 - HP15_1976 0.28 +0.8
2,091,795 - HP15_1976 0.28 -0.2
2,091,807 + HP15_1976 0.31 -1.4
2,091,975 + HP15_1976 0.75 -0.4
2,091,975 + HP15_1976 0.75 +0.1
2,091,975 + HP15_1976 0.75 +0.8
2,091,976 - HP15_1976 0.75 -0.3
2,091,983 - HP15_1976 0.77 +0.5

Or see this region's nucleotide sequence