Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1958 and HP15_1959 overlap by 1 nucleotides HP15_1959 and HP15_1960 overlap by 11 nucleotides HP15_1960 and HP15_1961 overlap by 1 nucleotides HP15_1961 and HP15_1962 are separated by 83 nucleotides
HP15_1958: HP15_1958 - hypothetical protein, at 2,077,504 to 2,077,914
_1958
HP15_1959: HP15_1959 - conserved hypothetical protein, at 2,077,914 to 2,078,531
_1959
HP15_1960: HP15_1960 - hypothetical protein, at 2,078,521 to 2,078,835
_1960
HP15_1961: HP15_1961 - hypothetical protein, at 2,078,835 to 2,079,107
_1961
HP15_1962: HP15_1962 - capsid protein of prophage, at 2,079,191 to 2,080,210
_1962
Position (kb)
2078
2079 Strain fitness (log2 ratio)
-1
0
1
2 at 2077.522 kb on - strand at 2077.523 kb on - strand at 2077.542 kb on + strand at 2077.550 kb on - strand, within HP15_1958 at 2077.581 kb on + strand, within HP15_1958 at 2077.581 kb on + strand, within HP15_1958 at 2077.581 kb on + strand, within HP15_1958 at 2077.589 kb on - strand, within HP15_1958 at 2077.594 kb on - strand, within HP15_1958 at 2077.639 kb on + strand, within HP15_1958 at 2077.639 kb on + strand, within HP15_1958 at 2077.646 kb on + strand, within HP15_1958 at 2077.647 kb on - strand, within HP15_1958 at 2077.658 kb on + strand, within HP15_1958 at 2077.688 kb on - strand, within HP15_1958 at 2077.734 kb on + strand, within HP15_1958 at 2077.742 kb on - strand, within HP15_1958 at 2077.837 kb on + strand, within HP15_1958 at 2077.875 kb on - strand at 2077.896 kb on + strand at 2078.067 kb on - strand, within HP15_1959 at 2078.127 kb on - strand, within HP15_1959 at 2078.127 kb on - strand, within HP15_1959 at 2078.154 kb on + strand, within HP15_1959 at 2078.285 kb on + strand, within HP15_1959 at 2078.340 kb on - strand, within HP15_1959 at 2078.355 kb on + strand, within HP15_1959 at 2078.360 kb on - strand, within HP15_1959 at 2078.363 kb on - strand, within HP15_1959 at 2078.378 kb on - strand, within HP15_1959 at 2078.410 kb on + strand, within HP15_1959 at 2078.543 kb on + strand at 2078.638 kb on + strand, within HP15_1960 at 2078.680 kb on - strand, within HP15_1960 at 2078.698 kb on + strand, within HP15_1960 at 2078.708 kb on + strand, within HP15_1960 at 2078.713 kb on + strand, within HP15_1960 at 2078.756 kb on - strand, within HP15_1960 at 2078.806 kb on + strand at 2078.892 kb on + strand, within HP15_1961 at 2078.900 kb on - strand, within HP15_1961 at 2078.915 kb on + strand, within HP15_1961 at 2079.040 kb on + strand, within HP15_1961 at 2079.220 kb on + strand at 2079.228 kb on - strand at 2079.324 kb on + strand, within HP15_1962 at 2079.456 kb on + strand, within HP15_1962 at 2079.466 kb on + strand, within HP15_1962 at 2079.509 kb on - strand, within HP15_1962 at 2079.544 kb on + strand, within HP15_1962 at 2079.652 kb on + strand, within HP15_1962 at 2079.660 kb on - strand, within HP15_1962 at 2079.744 kb on - strand, within HP15_1962 at 2079.813 kb on + strand, within HP15_1962
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 2,077,522 - -0.2 2,077,523 - -0.5 2,077,542 + -1.0 2,077,550 - HP15_1958 0.11 -1.4 2,077,581 + HP15_1958 0.19 +0.7 2,077,581 + HP15_1958 0.19 -1.4 2,077,581 + HP15_1958 0.19 -0.3 2,077,589 - HP15_1958 0.21 -0.3 2,077,594 - HP15_1958 0.22 +0.1 2,077,639 + HP15_1958 0.33 +0.7 2,077,639 + HP15_1958 0.33 +1.0 2,077,646 + HP15_1958 0.35 +0.2 2,077,647 - HP15_1958 0.35 +0.3 2,077,658 + HP15_1958 0.37 +0.2 2,077,688 - HP15_1958 0.45 +0.7 2,077,734 + HP15_1958 0.56 +0.7 2,077,742 - HP15_1958 0.58 -0.1 2,077,837 + HP15_1958 0.81 +0.8 2,077,875 - -0.5 2,077,896 + +0.5 2,078,067 - HP15_1959 0.25 -0.6 2,078,127 - HP15_1959 0.34 +1.1 2,078,127 - HP15_1959 0.34 -0.8 2,078,154 + HP15_1959 0.39 +0.4 2,078,285 + HP15_1959 0.60 +0.6 2,078,340 - HP15_1959 0.69 -0.2 2,078,355 + HP15_1959 0.71 -1.5 2,078,360 - HP15_1959 0.72 -0.2 2,078,363 - HP15_1959 0.73 +0.1 2,078,378 - HP15_1959 0.75 -1.1 2,078,410 + HP15_1959 0.80 -0.2 2,078,543 + +0.9 2,078,638 + HP15_1960 0.37 -1.0 2,078,680 - HP15_1960 0.50 -0.3 2,078,698 + HP15_1960 0.56 +0.1 2,078,708 + HP15_1960 0.59 -0.2 2,078,713 + HP15_1960 0.61 -0.3 2,078,756 - HP15_1960 0.75 -0.4 2,078,806 + -0.3 2,078,892 + HP15_1961 0.21 -0.3 2,078,900 - HP15_1961 0.24 -0.3 2,078,915 + HP15_1961 0.29 -0.2 2,079,040 + HP15_1961 0.75 +0.7 2,079,220 + -0.3 2,079,228 - -0.1 2,079,324 + HP15_1962 0.13 -0.1 2,079,456 + HP15_1962 0.26 +0.0 2,079,466 + HP15_1962 0.27 -0.9 2,079,509 - HP15_1962 0.31 +0.5 2,079,544 + HP15_1962 0.35 -0.2 2,079,652 + HP15_1962 0.45 +2.0 2,079,660 - HP15_1962 0.46 +0.4 2,079,744 - HP15_1962 0.54 -0.2 2,079,813 + HP15_1962 0.61 -0.8
Or see this region's nucleotide sequence