Strain Fitness in Marinobacter adhaerens HP15 around HP15_1960

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1958 and HP15_1959 overlap by 1 nucleotidesHP15_1959 and HP15_1960 overlap by 11 nucleotidesHP15_1960 and HP15_1961 overlap by 1 nucleotidesHP15_1961 and HP15_1962 are separated by 83 nucleotides HP15_1958: HP15_1958 - hypothetical protein, at 2,077,504 to 2,077,914 _1958 HP15_1959: HP15_1959 - conserved hypothetical protein, at 2,077,914 to 2,078,531 _1959 HP15_1960: HP15_1960 - hypothetical protein, at 2,078,521 to 2,078,835 _1960 HP15_1961: HP15_1961 - hypothetical protein, at 2,078,835 to 2,079,107 _1961 HP15_1962: HP15_1962 - capsid protein of prophage, at 2,079,191 to 2,080,210 _1962 Position (kb) 2078 2079Strain fitness (log2 ratio) -1 0 1 2at 2077.522 kb on - strandat 2077.523 kb on - strandat 2077.542 kb on + strandat 2077.550 kb on - strand, within HP15_1958at 2077.581 kb on + strand, within HP15_1958at 2077.581 kb on + strand, within HP15_1958at 2077.581 kb on + strand, within HP15_1958at 2077.589 kb on - strand, within HP15_1958at 2077.594 kb on - strand, within HP15_1958at 2077.639 kb on + strand, within HP15_1958at 2077.639 kb on + strand, within HP15_1958at 2077.646 kb on + strand, within HP15_1958at 2077.647 kb on - strand, within HP15_1958at 2077.658 kb on + strand, within HP15_1958at 2077.688 kb on - strand, within HP15_1958at 2077.734 kb on + strand, within HP15_1958at 2077.742 kb on - strand, within HP15_1958at 2077.837 kb on + strand, within HP15_1958at 2077.875 kb on - strandat 2077.896 kb on + strandat 2078.067 kb on - strand, within HP15_1959at 2078.127 kb on - strand, within HP15_1959at 2078.127 kb on - strand, within HP15_1959at 2078.154 kb on + strand, within HP15_1959at 2078.285 kb on + strand, within HP15_1959at 2078.340 kb on - strand, within HP15_1959at 2078.355 kb on + strand, within HP15_1959at 2078.360 kb on - strand, within HP15_1959at 2078.363 kb on - strand, within HP15_1959at 2078.378 kb on - strand, within HP15_1959at 2078.410 kb on + strand, within HP15_1959at 2078.543 kb on + strandat 2078.638 kb on + strand, within HP15_1960at 2078.680 kb on - strand, within HP15_1960at 2078.698 kb on + strand, within HP15_1960at 2078.708 kb on + strand, within HP15_1960at 2078.713 kb on + strand, within HP15_1960at 2078.756 kb on - strand, within HP15_1960at 2078.806 kb on + strandat 2078.892 kb on + strand, within HP15_1961at 2078.900 kb on - strand, within HP15_1961at 2078.915 kb on + strand, within HP15_1961at 2079.040 kb on + strand, within HP15_1961at 2079.220 kb on + strandat 2079.228 kb on - strandat 2079.324 kb on + strand, within HP15_1962at 2079.456 kb on + strand, within HP15_1962at 2079.466 kb on + strand, within HP15_1962at 2079.509 kb on - strand, within HP15_1962at 2079.544 kb on + strand, within HP15_1962at 2079.652 kb on + strand, within HP15_1962at 2079.660 kb on - strand, within HP15_1962at 2079.744 kb on - strand, within HP15_1962at 2079.813 kb on + strand, within HP15_1962

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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2,077,522 - -0.2
2,077,523 - -0.5
2,077,542 + -1.0
2,077,550 - HP15_1958 0.11 -1.4
2,077,581 + HP15_1958 0.19 +0.7
2,077,581 + HP15_1958 0.19 -1.4
2,077,581 + HP15_1958 0.19 -0.3
2,077,589 - HP15_1958 0.21 -0.3
2,077,594 - HP15_1958 0.22 +0.1
2,077,639 + HP15_1958 0.33 +0.7
2,077,639 + HP15_1958 0.33 +1.0
2,077,646 + HP15_1958 0.35 +0.2
2,077,647 - HP15_1958 0.35 +0.3
2,077,658 + HP15_1958 0.37 +0.2
2,077,688 - HP15_1958 0.45 +0.7
2,077,734 + HP15_1958 0.56 +0.7
2,077,742 - HP15_1958 0.58 -0.1
2,077,837 + HP15_1958 0.81 +0.8
2,077,875 - -0.5
2,077,896 + +0.5
2,078,067 - HP15_1959 0.25 -0.6
2,078,127 - HP15_1959 0.34 +1.1
2,078,127 - HP15_1959 0.34 -0.8
2,078,154 + HP15_1959 0.39 +0.4
2,078,285 + HP15_1959 0.60 +0.6
2,078,340 - HP15_1959 0.69 -0.2
2,078,355 + HP15_1959 0.71 -1.5
2,078,360 - HP15_1959 0.72 -0.2
2,078,363 - HP15_1959 0.73 +0.1
2,078,378 - HP15_1959 0.75 -1.1
2,078,410 + HP15_1959 0.80 -0.2
2,078,543 + +0.9
2,078,638 + HP15_1960 0.37 -1.0
2,078,680 - HP15_1960 0.50 -0.3
2,078,698 + HP15_1960 0.56 +0.1
2,078,708 + HP15_1960 0.59 -0.2
2,078,713 + HP15_1960 0.61 -0.3
2,078,756 - HP15_1960 0.75 -0.4
2,078,806 + -0.3
2,078,892 + HP15_1961 0.21 -0.3
2,078,900 - HP15_1961 0.24 -0.3
2,078,915 + HP15_1961 0.29 -0.2
2,079,040 + HP15_1961 0.75 +0.7
2,079,220 + -0.3
2,079,228 - -0.1
2,079,324 + HP15_1962 0.13 -0.1
2,079,456 + HP15_1962 0.26 +0.0
2,079,466 + HP15_1962 0.27 -0.9
2,079,509 - HP15_1962 0.31 +0.5
2,079,544 + HP15_1962 0.35 -0.2
2,079,652 + HP15_1962 0.45 +2.0
2,079,660 - HP15_1962 0.46 +0.4
2,079,744 - HP15_1962 0.54 -0.2
2,079,813 + HP15_1962 0.61 -0.8

Or see this region's nucleotide sequence