Experiment: L-Isoleucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1875 and HP15_1876 are separated by 72 nucleotides HP15_1876 and HP15_1877 are separated by 17 nucleotides HP15_1877 and HP15_1878 are separated by 23 nucleotides
HP15_1875: HP15_1875 - conserved hypothetical protein, at 1,980,980 to 1,982,119
_1875
HP15_1876: HP15_1876 - ATPase associated with various cellular activities AAA_5, at 1,982,192 to 1,983,034
_1876
HP15_1877: HP15_1877 - hypothetical protein, at 1,983,052 to 1,983,405
_1877
HP15_1878: HP15_1878 - von Willebrand factor, type A, at 1,983,429 to 1,985,174
_1878
Position (kb) 1983
1984 Strain fitness (log2 ratio) -1
0
1
2 at 1982.069 kb on + strand at 1982.247 kb on - strand at 1982.395 kb on - strand, within HP15_1876 at 1982.396 kb on - strand, within HP15_1876 at 1982.486 kb on + strand, within HP15_1876 at 1982.719 kb on + strand, within HP15_1876 at 1983.288 kb on + strand, within HP15_1877 at 1983.709 kb on - strand, within HP15_1878 at 1983.815 kb on + strand, within HP15_1878 at 1983.832 kb on - strand, within HP15_1878 at 1983.869 kb on + strand, within HP15_1878 at 1983.950 kb on + strand, within HP15_1878 at 1983.958 kb on + strand, within HP15_1878 at 1983.966 kb on - strand, within HP15_1878 at 1983.966 kb on - strand, within HP15_1878 at 1984.058 kb on + strand, within HP15_1878 at 1984.078 kb on - strand, within HP15_1878 at 1984.148 kb on + strand, within HP15_1878 at 1984.201 kb on - strand, within HP15_1878 at 1984.225 kb on + strand, within HP15_1878 at 1984.396 kb on - strand, within HP15_1878
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine as (N) remove 1,982,069 + +0.9 1,982,247 - -0.1 1,982,395 - HP15_1876 0.24 -0.5 1,982,396 - HP15_1876 0.24 +1.8 1,982,486 + HP15_1876 0.35 +0.9 1,982,719 + HP15_1876 0.63 -0.1 1,983,288 + HP15_1877 0.67 -0.5 1,983,709 - HP15_1878 0.16 -0.9 1,983,815 + HP15_1878 0.22 +0.4 1,983,832 - HP15_1878 0.23 +0.5 1,983,869 + HP15_1878 0.25 -0.2 1,983,950 + HP15_1878 0.30 -0.4 1,983,958 + HP15_1878 0.30 -1.2 1,983,966 - HP15_1878 0.31 -0.9 1,983,966 - HP15_1878 0.31 +0.6 1,984,058 + HP15_1878 0.36 -0.3 1,984,078 - HP15_1878 0.37 +0.0 1,984,148 + HP15_1878 0.41 -0.6 1,984,201 - HP15_1878 0.44 -0.6 1,984,225 + HP15_1878 0.46 -0.4 1,984,396 - HP15_1878 0.55 -0.6
Or see this region's nucleotide sequence