Strain Fitness in Marinobacter adhaerens HP15 around HP15_1839

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1838 and HP15_1839 are separated by 37 nucleotidesHP15_1839 and HP15_1840 are separated by 88 nucleotides HP15_1838: HP15_1838 - chorismate synthase, at 1,937,464 to 1,938,558 _1838 HP15_1839: HP15_1839 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 1,938,596 to 1,939,498 _1839 HP15_1840: HP15_1840 - patatin, at 1,939,587 to 1,940,801 _1840 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -1 0 1at 1939.136 kb on - strand, within HP15_1839at 1939.256 kb on - strand, within HP15_1839at 1939.299 kb on - strand, within HP15_1839at 1939.611 kb on + strandat 1939.619 kb on - strandat 1939.753 kb on + strand, within HP15_1840at 1939.753 kb on + strand, within HP15_1840at 1939.753 kb on + strand, within HP15_1840at 1939.784 kb on - strand, within HP15_1840at 1939.908 kb on + strand, within HP15_1840at 1940.031 kb on - strand, within HP15_1840at 1940.060 kb on + strand, within HP15_1840at 1940.173 kb on + strand, within HP15_1840at 1940.186 kb on - strand, within HP15_1840at 1940.260 kb on + strand, within HP15_1840at 1940.456 kb on + strand, within HP15_1840at 1940.478 kb on - strand, within HP15_1840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,939,136 - HP15_1839 0.60 -1.2
1,939,256 - HP15_1839 0.73 -0.1
1,939,299 - HP15_1839 0.78 -0.3
1,939,611 + -0.3
1,939,619 - -1.2
1,939,753 + HP15_1840 0.14 -0.0
1,939,753 + HP15_1840 0.14 +0.1
1,939,753 + HP15_1840 0.14 +1.2
1,939,784 - HP15_1840 0.16 +0.3
1,939,908 + HP15_1840 0.26 -0.2
1,940,031 - HP15_1840 0.37 -0.4
1,940,060 + HP15_1840 0.39 -0.5
1,940,173 + HP15_1840 0.48 -0.2
1,940,186 - HP15_1840 0.49 +1.0
1,940,260 + HP15_1840 0.55 +0.0
1,940,456 + HP15_1840 0.72 +0.4
1,940,478 - HP15_1840 0.73 -1.0

Or see this region's nucleotide sequence