Strain Fitness in Marinobacter adhaerens HP15 around HP15_1834

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1832 and HP15_1833 are separated by 42 nucleotidesHP15_1833 and HP15_1834 are separated by 16 nucleotidesHP15_1834 and HP15_1835 are separated by 347 nucleotides HP15_1832: HP15_1832 - 3-isopropylmalate dehydrogenase, at 1,931,640 to 1,932,731 _1832 HP15_1833: HP15_1833 - isopropylmalate isomerase small subunit, at 1,932,774 to 1,933,421 _1833 HP15_1834: HP15_1834 - protein containing 3-isopropylmalate dehydratase, large subunit region domain, at 1,933,438 to 1,934,856 _1834 HP15_1835: HP15_1835 - transcriptional regulator LysR family protein, at 1,935,204 to 1,936,154 _1835 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1932.449 kb on - strand, within HP15_1832at 1932.584 kb on + strand, within HP15_1832at 1932.711 kb on - strandat 1932.842 kb on - strand, within HP15_1833at 1933.149 kb on + strand, within HP15_1833at 1933.182 kb on + strand, within HP15_1833at 1933.201 kb on + strand, within HP15_1833at 1933.367 kb on + strandat 1933.423 kb on + strandat 1933.449 kb on - strandat 1933.547 kb on + strandat 1933.568 kb on + strandat 1933.666 kb on + strand, within HP15_1834at 1933.726 kb on - strand, within HP15_1834at 1933.873 kb on - strand, within HP15_1834at 1934.062 kb on + strand, within HP15_1834at 1934.331 kb on - strand, within HP15_1834at 1934.424 kb on - strand, within HP15_1834at 1934.439 kb on - strand, within HP15_1834at 1934.445 kb on + strand, within HP15_1834at 1934.546 kb on + strand, within HP15_1834at 1934.649 kb on - strand, within HP15_1834at 1934.734 kb on + strandat 1934.745 kb on + strandat 1934.836 kb on + strandat 1934.863 kb on + strandat 1934.871 kb on + strandat 1934.879 kb on - strandat 1935.003 kb on + strandat 1935.011 kb on - strandat 1935.164 kb on + strandat 1935.209 kb on - strandat 1935.249 kb on - strandat 1935.287 kb on - strandat 1935.486 kb on + strand, within HP15_1835at 1935.543 kb on - strand, within HP15_1835at 1935.639 kb on - strand, within HP15_1835at 1935.664 kb on - strand, within HP15_1835at 1935.841 kb on + strand, within HP15_1835

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,932,449 - HP15_1832 0.74 -1.0
1,932,584 + HP15_1832 0.86 -1.9
1,932,711 - -0.2
1,932,842 - HP15_1833 0.10 -2.5
1,933,149 + HP15_1833 0.58 -3.8
1,933,182 + HP15_1833 0.63 +1.3
1,933,201 + HP15_1833 0.66 -3.3
1,933,367 + -2.4
1,933,423 + -0.7
1,933,449 - -0.5
1,933,547 + -3.7
1,933,568 + -1.7
1,933,666 + HP15_1834 0.16 -3.6
1,933,726 - HP15_1834 0.20 -0.7
1,933,873 - HP15_1834 0.31 +1.1
1,934,062 + HP15_1834 0.44 -2.2
1,934,331 - HP15_1834 0.63 -0.2
1,934,424 - HP15_1834 0.69 -2.5
1,934,439 - HP15_1834 0.71 -0.9
1,934,445 + HP15_1834 0.71 -1.2
1,934,546 + HP15_1834 0.78 -2.8
1,934,649 - HP15_1834 0.85 -1.1
1,934,734 + -1.4
1,934,745 + -1.0
1,934,836 + -1.4
1,934,863 + -0.4
1,934,871 + -3.1
1,934,879 - -1.8
1,935,003 + +0.3
1,935,011 - +0.7
1,935,164 + -0.3
1,935,209 - +0.5
1,935,249 - +0.3
1,935,287 - +0.4
1,935,486 + HP15_1835 0.30 +0.5
1,935,543 - HP15_1835 0.36 -0.1
1,935,639 - HP15_1835 0.46 +0.4
1,935,664 - HP15_1835 0.48 +0.2
1,935,841 + HP15_1835 0.67 +0.4

Or see this region's nucleotide sequence