Strain Fitness in Marinobacter adhaerens HP15 around HP15_1832

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1831 and HP15_1832 are separated by 164 nucleotidesHP15_1832 and HP15_1833 are separated by 42 nucleotidesHP15_1833 and HP15_1834 are separated by 16 nucleotides HP15_1831: HP15_1831 - aspartate-semialdehyde dehydrogenase, at 1,930,393 to 1,931,475 _1831 HP15_1832: HP15_1832 - 3-isopropylmalate dehydrogenase, at 1,931,640 to 1,932,731 _1832 HP15_1833: HP15_1833 - isopropylmalate isomerase small subunit, at 1,932,774 to 1,933,421 _1833 HP15_1834: HP15_1834 - protein containing 3-isopropylmalate dehydratase, large subunit region domain, at 1,933,438 to 1,934,856 _1834 Position (kb) 1931 1932 1933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1931.635 kb on + strandat 1931.641 kb on - strandat 1931.902 kb on - strand, within HP15_1832at 1932.029 kb on - strand, within HP15_1832at 1932.062 kb on + strand, within HP15_1832at 1932.225 kb on + strand, within HP15_1832at 1932.233 kb on - strand, within HP15_1832at 1932.234 kb on + strand, within HP15_1832at 1932.386 kb on + strand, within HP15_1832at 1932.421 kb on - strand, within HP15_1832at 1932.449 kb on - strand, within HP15_1832at 1932.584 kb on + strand, within HP15_1832at 1932.711 kb on - strandat 1932.842 kb on - strand, within HP15_1833at 1933.149 kb on + strand, within HP15_1833at 1933.182 kb on + strand, within HP15_1833at 1933.201 kb on + strand, within HP15_1833at 1933.367 kb on + strandat 1933.423 kb on + strandat 1933.449 kb on - strandat 1933.547 kb on + strandat 1933.568 kb on + strandat 1933.666 kb on + strand, within HP15_1834at 1933.726 kb on - strand, within HP15_1834

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,931,635 + -0.7
1,931,641 - -1.8
1,931,902 - HP15_1832 0.24 -1.4
1,932,029 - HP15_1832 0.36 -1.0
1,932,062 + HP15_1832 0.39 -2.5
1,932,225 + HP15_1832 0.54 -3.0
1,932,233 - HP15_1832 0.54 -2.1
1,932,234 + HP15_1832 0.54 -2.0
1,932,386 + HP15_1832 0.68 -1.3
1,932,421 - HP15_1832 0.72 -2.2
1,932,449 - HP15_1832 0.74 -1.0
1,932,584 + HP15_1832 0.86 -1.9
1,932,711 - -0.2
1,932,842 - HP15_1833 0.10 -2.5
1,933,149 + HP15_1833 0.58 -3.8
1,933,182 + HP15_1833 0.63 +1.3
1,933,201 + HP15_1833 0.66 -3.3
1,933,367 + -2.4
1,933,423 + -0.7
1,933,449 - -0.5
1,933,547 + -3.7
1,933,568 + -1.7
1,933,666 + HP15_1834 0.16 -3.6
1,933,726 - HP15_1834 0.20 -0.7

Or see this region's nucleotide sequence