Strain Fitness in Marinobacter adhaerens HP15 around HP15_1744

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1743 and HP15_1744 are separated by 15 nucleotidesHP15_1744 and HP15_tRNA33 are separated by 193 nucleotidesHP15_tRNA33 and HP15_1745 are separated by 75 nucleotides HP15_1743: HP15_1743 - conserved hypothetical protein, at 1,839,647 to 1,842,152 _1743 HP15_1744: HP15_1744 - AAA ATPase central domain protein, at 1,842,168 to 1,843,142 _1744 HP15_tRNA33: HP15_tRNA33 - tRNA-Leu, at 1,843,336 to 1,843,422 _tRNA33 HP15_1745: HP15_1745 - methyltransferase type 11, at 1,843,498 to 1,844,151 _1745 Position (kb) 1842 1843 1844Strain fitness (log2 ratio) -1 0 1at 1841.371 kb on + strand, within HP15_1743at 1841.456 kb on - strand, within HP15_1743at 1841.459 kb on + strand, within HP15_1743at 1841.591 kb on - strand, within HP15_1743at 1841.663 kb on - strand, within HP15_1743at 1841.749 kb on - strand, within HP15_1743at 1841.758 kb on - strand, within HP15_1743at 1841.758 kb on - strand, within HP15_1743at 1841.924 kb on + strandat 1841.932 kb on - strandat 1841.947 kb on + strandat 1841.974 kb on + strandat 1842.013 kb on - strandat 1842.013 kb on - strandat 1842.018 kb on - strandat 1842.411 kb on + strand, within HP15_1744at 1842.691 kb on + strand, within HP15_1744at 1843.117 kb on + strandat 1843.152 kb on - strandat 1843.311 kb on + strandat 1843.511 kb on - strandat 1843.513 kb on + strandat 1843.523 kb on + strandat 1843.576 kb on - strand, within HP15_1745at 1843.576 kb on - strand, within HP15_1745at 1843.634 kb on - strand, within HP15_1745at 1843.634 kb on - strand, within HP15_1745at 1843.787 kb on - strand, within HP15_1745at 1843.813 kb on - strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.835 kb on - strand, within HP15_1745at 1843.835 kb on - strand, within HP15_1745at 1843.919 kb on + strand, within HP15_1745at 1843.921 kb on - strand, within HP15_1745at 1843.941 kb on + strand, within HP15_1745at 1844.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,841,371 + HP15_1743 0.69 -0.6
1,841,456 - HP15_1743 0.72 +0.4
1,841,459 + HP15_1743 0.72 -0.6
1,841,591 - HP15_1743 0.78 +0.3
1,841,663 - HP15_1743 0.80 +0.2
1,841,749 - HP15_1743 0.84 +0.4
1,841,758 - HP15_1743 0.84 +0.2
1,841,758 - HP15_1743 0.84 +0.2
1,841,924 + +0.4
1,841,932 - +0.3
1,841,947 + +0.1
1,841,974 + +0.3
1,842,013 - -0.5
1,842,013 - +0.9
1,842,018 - +0.2
1,842,411 + HP15_1744 0.25 -0.4
1,842,691 + HP15_1744 0.54 -0.6
1,843,117 + +0.2
1,843,152 - -0.1
1,843,311 + +1.2
1,843,511 - -1.2
1,843,513 + +0.7
1,843,523 + -0.2
1,843,576 - HP15_1745 0.12 +0.1
1,843,576 - HP15_1745 0.12 +0.4
1,843,634 - HP15_1745 0.21 +0.3
1,843,634 - HP15_1745 0.21 -0.8
1,843,787 - HP15_1745 0.44 -0.5
1,843,813 - HP15_1745 0.48 -0.1
1,843,815 + HP15_1745 0.48 -1.5
1,843,815 + HP15_1745 0.48 -0.5
1,843,815 + HP15_1745 0.48 -0.3
1,843,815 + HP15_1745 0.48 +0.3
1,843,815 + HP15_1745 0.48 +0.2
1,843,823 - HP15_1745 0.50 +0.9
1,843,823 - HP15_1745 0.50 +0.4
1,843,823 - HP15_1745 0.50 -0.4
1,843,823 - HP15_1745 0.50 +0.7
1,843,823 - HP15_1745 0.50 +0.4
1,843,835 - HP15_1745 0.52 +0.6
1,843,835 - HP15_1745 0.52 +0.1
1,843,919 + HP15_1745 0.64 +1.3
1,843,921 - HP15_1745 0.65 -0.0
1,843,941 + HP15_1745 0.68 +0.3
1,844,123 - +0.3

Or see this region's nucleotide sequence