Strain Fitness in Marinobacter adhaerens HP15 around HP15_1625

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1623 and HP15_1624 are separated by 30 nucleotidesHP15_1624 and HP15_1625 are separated by 193 nucleotidesHP15_1625 and HP15_1626 are separated by 167 nucleotidesHP15_1626 and HP15_1627 are separated by 170 nucleotidesHP15_1627 and HP15_1628 are separated by 251 nucleotides HP15_1623: HP15_1623 - conserved hypothetical protein, at 1,720,662 to 1,723,118 _1623 HP15_1624: HP15_1624 - YebG, at 1,723,149 to 1,723,376 _1624 HP15_1625: HP15_1625 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,723,570 to 1,724,538 _1625 HP15_1626: HP15_1626 - conserved hypothetical protein, at 1,724,706 to 1,724,957 _1626 HP15_1627: HP15_1627 - conserved hypothetical protein, at 1,725,128 to 1,725,280 _1627 HP15_1628: HP15_1628 - peptidoglycan-binding domain 1 protein-like protein, at 1,725,532 to 1,726,653 _1628 Position (kb) 1723 1724 1725Strain fitness (log2 ratio) -1 0 1 2at 1722.589 kb on + strand, within HP15_1623at 1722.589 kb on + strand, within HP15_1623at 1722.597 kb on - strand, within HP15_1623at 1722.606 kb on + strand, within HP15_1623at 1722.758 kb on - strand, within HP15_1623at 1722.834 kb on + strand, within HP15_1623at 1722.890 kb on + strandat 1722.963 kb on + strandat 1722.963 kb on + strandat 1723.021 kb on - strandat 1723.076 kb on - strandat 1723.138 kb on + strandat 1723.202 kb on + strand, within HP15_1624at 1723.309 kb on + strand, within HP15_1624at 1723.376 kb on + strandat 1723.434 kb on + strandat 1723.584 kb on + strandat 1723.592 kb on - strandat 1723.664 kb on + strandat 1723.676 kb on - strand, within HP15_1625at 1723.923 kb on - strand, within HP15_1625at 1724.547 kb on - strandat 1724.563 kb on - strandat 1724.572 kb on + strandat 1724.576 kb on - strandat 1724.591 kb on + strandat 1724.647 kb on + strandat 1724.666 kb on + strandat 1724.671 kb on + strandat 1724.671 kb on + strandat 1724.671 kb on + strandat 1724.674 kb on - strandat 1724.674 kb on - strandat 1724.679 kb on - strandat 1724.906 kb on + strand, within HP15_1626at 1724.914 kb on - strand, within HP15_1626at 1724.936 kb on - strandat 1724.960 kb on - strandat 1725.010 kb on + strandat 1725.187 kb on + strand, within HP15_1627at 1725.273 kb on - strandat 1725.473 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,722,589 + HP15_1623 0.78 +0.3
1,722,589 + HP15_1623 0.78 +1.2
1,722,597 - HP15_1623 0.79 +0.1
1,722,606 + HP15_1623 0.79 +0.7
1,722,758 - HP15_1623 0.85 -0.0
1,722,834 + HP15_1623 0.88 -0.0
1,722,890 + -0.6
1,722,963 + +0.3
1,722,963 + +0.5
1,723,021 - +0.5
1,723,076 - -0.5
1,723,138 + +0.5
1,723,202 + HP15_1624 0.23 +0.0
1,723,309 + HP15_1624 0.70 -1.3
1,723,376 + -0.2
1,723,434 + +0.1
1,723,584 + -0.8
1,723,592 - -0.7
1,723,664 + -0.2
1,723,676 - HP15_1625 0.11 -0.6
1,723,923 - HP15_1625 0.36 -1.4
1,724,547 - -0.1
1,724,563 - +2.0
1,724,572 + +0.3
1,724,576 - -0.6
1,724,591 + -1.0
1,724,647 + -0.4
1,724,666 + +0.2
1,724,671 + +0.9
1,724,671 + -0.2
1,724,671 + +0.6
1,724,674 - -0.2
1,724,674 - +0.5
1,724,679 - +0.0
1,724,906 + HP15_1626 0.79 +0.4
1,724,914 - HP15_1626 0.83 -0.7
1,724,936 - -0.8
1,724,960 - -0.5
1,725,010 + +0.2
1,725,187 + HP15_1627 0.39 +0.6
1,725,273 - -0.2
1,725,473 + -0.2

Or see this region's nucleotide sequence