Strain Fitness in Marinobacter adhaerens HP15 around HP15_1399

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1398 and HP15_1399 are separated by 153 nucleotidesHP15_1399 and HP15_1400 are separated by 30 nucleotides HP15_1398: HP15_1398 - tRNA-dihydrouridine synthase C, at 1,474,244 to 1,475,215 _1398 HP15_1399: HP15_1399 - metal-dependent hydrolase-like protein, at 1,475,369 to 1,476,334 _1399 HP15_1400: HP15_1400 - fructose-bisphosphate aldolase B, at 1,476,365 to 1,477,429 _1400 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -3 -2 -1 0 1at 1474.431 kb on + strand, within HP15_1398at 1474.506 kb on + strand, within HP15_1398at 1474.558 kb on + strand, within HP15_1398at 1474.566 kb on - strand, within HP15_1398at 1474.577 kb on - strand, within HP15_1398at 1474.582 kb on - strand, within HP15_1398at 1474.621 kb on + strand, within HP15_1398at 1474.719 kb on + strand, within HP15_1398at 1474.817 kb on + strand, within HP15_1398at 1474.866 kb on + strand, within HP15_1398at 1474.875 kb on + strand, within HP15_1398at 1474.883 kb on - strand, within HP15_1398at 1474.934 kb on + strand, within HP15_1398at 1474.989 kb on - strand, within HP15_1398at 1475.000 kb on - strand, within HP15_1398at 1475.051 kb on - strand, within HP15_1398at 1475.172 kb on + strandat 1475.180 kb on - strandat 1475.251 kb on - strandat 1475.265 kb on + strandat 1475.453 kb on + strandat 1475.461 kb on - strandat 1475.461 kb on - strandat 1475.499 kb on - strand, within HP15_1399at 1475.503 kb on - strand, within HP15_1399at 1475.667 kb on + strand, within HP15_1399at 1475.675 kb on - strand, within HP15_1399at 1475.835 kb on - strand, within HP15_1399at 1475.937 kb on - strand, within HP15_1399at 1475.969 kb on + strand, within HP15_1399at 1475.999 kb on + strand, within HP15_1399at 1476.212 kb on + strand, within HP15_1399at 1476.340 kb on + strandat 1476.438 kb on + strandat 1476.525 kb on + strand, within HP15_1400at 1476.526 kb on + strand, within HP15_1400at 1476.533 kb on - strand, within HP15_1400at 1476.791 kb on + strand, within HP15_1400at 1476.814 kb on - strand, within HP15_1400at 1476.928 kb on - strand, within HP15_1400at 1477.012 kb on + strand, within HP15_1400at 1477.034 kb on + strand, within HP15_1400at 1477.096 kb on + strand, within HP15_1400at 1477.216 kb on + strand, within HP15_1400at 1477.238 kb on + strand, within HP15_1400at 1477.269 kb on + strand, within HP15_1400at 1477.270 kb on - strand, within HP15_1400

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,474,431 + HP15_1398 0.19 -0.6
1,474,506 + HP15_1398 0.27 +0.7
1,474,558 + HP15_1398 0.32 -0.2
1,474,566 - HP15_1398 0.33 -2.0
1,474,577 - HP15_1398 0.34 -0.5
1,474,582 - HP15_1398 0.35 -0.2
1,474,621 + HP15_1398 0.39 +0.2
1,474,719 + HP15_1398 0.49 -0.4
1,474,817 + HP15_1398 0.59 +1.4
1,474,866 + HP15_1398 0.64 -0.6
1,474,875 + HP15_1398 0.65 -0.1
1,474,883 - HP15_1398 0.66 -0.2
1,474,934 + HP15_1398 0.71 +0.8
1,474,989 - HP15_1398 0.77 +0.1
1,475,000 - HP15_1398 0.78 +0.4
1,475,051 - HP15_1398 0.83 -0.3
1,475,172 + -1.3
1,475,180 - +0.1
1,475,251 - -0.8
1,475,265 + +0.1
1,475,453 + +0.8
1,475,461 - -3.0
1,475,461 - -0.7
1,475,499 - HP15_1399 0.13 -0.1
1,475,503 - HP15_1399 0.14 -1.4
1,475,667 + HP15_1399 0.31 -0.6
1,475,675 - HP15_1399 0.32 -0.4
1,475,835 - HP15_1399 0.48 -0.2
1,475,937 - HP15_1399 0.59 +0.0
1,475,969 + HP15_1399 0.62 -1.0
1,475,999 + HP15_1399 0.65 -0.3
1,476,212 + HP15_1399 0.87 -0.4
1,476,340 + +0.1
1,476,438 + +0.3
1,476,525 + HP15_1400 0.15 -0.4
1,476,526 + HP15_1400 0.15 -0.2
1,476,533 - HP15_1400 0.16 -0.6
1,476,791 + HP15_1400 0.40 +0.2
1,476,814 - HP15_1400 0.42 -0.2
1,476,928 - HP15_1400 0.53 +0.0
1,477,012 + HP15_1400 0.61 +0.6
1,477,034 + HP15_1400 0.63 +0.7
1,477,096 + HP15_1400 0.69 -0.1
1,477,216 + HP15_1400 0.80 +0.5
1,477,238 + HP15_1400 0.82 -0.1
1,477,269 + HP15_1400 0.85 -0.4
1,477,270 - HP15_1400 0.85 +1.3

Or see this region's nucleotide sequence