Strain Fitness in Marinobacter adhaerens HP15 around HP15_1369

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1366 and HP15_1367 are separated by 134 nucleotidesHP15_1367 and HP15_1368 are separated by 59 nucleotidesHP15_1368 and HP15_1369 overlap by 1 nucleotidesHP15_1369 and HP15_1370 are separated by 26 nucleotides HP15_1366: HP15_1366 - ribosomal S1 synthesis/modification protein, at 1,438,618 to 1,440,312 _1366 HP15_1367: HP15_1367 - integration host factor, beta subunit, at 1,440,447 to 1,440,743 _1367 HP15_1368: HP15_1368 - membrane protein containing DUF1049, at 1,440,803 to 1,441,105 _1368 HP15_1369: HP15_1369 - conserved hypothetical protein, at 1,441,105 to 1,442,274 _1369 HP15_1370: HP15_1370 - orotidine 5'-phosphate decarboxylase, at 1,442,301 to 1,443,017 _1370 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -2 -1 0 1at 1440.776 kb on + strandat 1441.256 kb on + strand, within HP15_1369at 1441.519 kb on + strand, within HP15_1369at 1441.535 kb on + strand, within HP15_1369at 1441.554 kb on + strand, within HP15_1369at 1441.647 kb on + strand, within HP15_1369at 1441.796 kb on + strand, within HP15_1369at 1441.883 kb on - strand, within HP15_1369at 1442.064 kb on + strand, within HP15_1369at 1442.064 kb on + strand, within HP15_1369at 1442.097 kb on + strand, within HP15_1369at 1442.269 kb on + strandat 1442.269 kb on + strandat 1443.137 kb on + strandat 1443.139 kb on + strandat 1443.177 kb on - strandat 1443.182 kb on - strandat 1443.229 kb on + strandat 1443.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,440,776 + -0.1
1,441,256 + HP15_1369 0.13 -0.4
1,441,519 + HP15_1369 0.35 +0.2
1,441,535 + HP15_1369 0.37 -0.9
1,441,554 + HP15_1369 0.38 +0.0
1,441,647 + HP15_1369 0.46 -1.0
1,441,796 + HP15_1369 0.59 -1.2
1,441,883 - HP15_1369 0.66 -0.5
1,442,064 + HP15_1369 0.82 +0.3
1,442,064 + HP15_1369 0.82 -1.1
1,442,097 + HP15_1369 0.85 +0.0
1,442,269 + +0.4
1,442,269 + -0.3
1,443,137 + +0.3
1,443,139 + -0.7
1,443,177 - +0.3
1,443,182 - -2.3
1,443,229 + -0.3
1,443,237 - -0.4

Or see this region's nucleotide sequence