Strain Fitness in Marinobacter adhaerens HP15 around HP15_1311

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1310 and HP15_1311 are separated by 45 nucleotidesHP15_1311 and HP15_1312 are separated by 13 nucleotidesHP15_1312 and HP15_1313 are separated by 5 nucleotides HP15_1310: HP15_1310 - methyl-accepting chemotaxis sensory transducer, at 1,369,393 to 1,371,423 _1310 HP15_1311: HP15_1311 - ATP-cobalamin adenosyltransferase, at 1,371,469 to 1,372,026 _1311 HP15_1312: HP15_1312 - 2-dehydropantoate 2-reductase, at 1,372,040 to 1,372,933 _1312 HP15_1313: HP15_1313 - valyl-tRNA synthetase, at 1,372,939 to 1,375,791 _1313 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -2 -1 0 1at 1370.517 kb on - strand, within HP15_1310at 1370.686 kb on - strand, within HP15_1310at 1370.801 kb on - strand, within HP15_1310at 1370.942 kb on - strand, within HP15_1310at 1370.947 kb on - strand, within HP15_1310at 1371.051 kb on - strand, within HP15_1310at 1371.051 kb on - strand, within HP15_1310at 1371.105 kb on - strand, within HP15_1310at 1371.140 kb on + strand, within HP15_1310at 1371.155 kb on + strand, within HP15_1310at 1371.417 kb on + strandat 1371.560 kb on - strand, within HP15_1311at 1371.574 kb on + strand, within HP15_1311at 1371.656 kb on + strand, within HP15_1311at 1371.972 kb on - strandat 1372.031 kb on - strandat 1372.327 kb on - strand, within HP15_1312at 1372.355 kb on + strand, within HP15_1312at 1372.602 kb on - strand, within HP15_1312at 1372.645 kb on - strand, within HP15_1312at 1372.670 kb on + strand, within HP15_1312at 1372.714 kb on - strand, within HP15_1312at 1372.728 kb on + strand, within HP15_1312at 1372.861 kb on + strandat 1372.872 kb on + strandat 1372.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,370,517 - HP15_1310 0.55 +1.1
1,370,686 - HP15_1310 0.64 -0.1
1,370,801 - HP15_1310 0.69 +0.1
1,370,942 - HP15_1310 0.76 +0.5
1,370,947 - HP15_1310 0.77 +0.0
1,371,051 - HP15_1310 0.82 -0.5
1,371,051 - HP15_1310 0.82 +0.2
1,371,105 - HP15_1310 0.84 -0.2
1,371,140 + HP15_1310 0.86 -1.2
1,371,155 + HP15_1310 0.87 +0.8
1,371,417 + +0.2
1,371,560 - HP15_1311 0.16 -0.3
1,371,574 + HP15_1311 0.19 -0.8
1,371,656 + HP15_1311 0.34 -0.4
1,371,972 - +0.1
1,372,031 - -0.5
1,372,327 - HP15_1312 0.32 -2.0
1,372,355 + HP15_1312 0.35 +1.0
1,372,602 - HP15_1312 0.63 -0.2
1,372,645 - HP15_1312 0.68 -2.0
1,372,670 + HP15_1312 0.70 +0.8
1,372,714 - HP15_1312 0.75 +0.5
1,372,728 + HP15_1312 0.77 -1.0
1,372,861 + -0.3
1,372,872 + -0.9
1,372,890 + +0.7

Or see this region's nucleotide sequence